Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
SOX2P48431 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SOX2P48431 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SOX2P48431 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SOX2P48431 AL451085.2-201ENST00000605085 799 ntBASIC18.73■□□□□ 0.59
SOX2P48431 AL031602.1-201ENST00000633169 911 ntBASIC18.73■□□□□ 0.59
SOX2P48431 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SOX2P48431 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SOX2P48431 USP45-205ENST00000472914 1617 ntTSL 5 BASIC18.73■□□□□ 0.59
SOX2P48431 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SOX2P48431 OR7E47P-201ENST00000546390 1422 ntBASIC18.73■□□□□ 0.59
SOX2P48431 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC18.73■□□□□ 0.59
SOX2P48431 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.73■□□□□ 0.59
SOX2P48431 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX2P48431 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SOX2P48431 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX2P48431 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
SOX2P48431 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC18.72■□□□□ 0.59
SOX2P48431 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC18.72■□□□□ 0.59
SOX2P48431 GTSE1-AS1-202ENST00000623117 1518 ntBASIC18.72■□□□□ 0.59
SOX2P48431 AC133637.1-201ENST00000624115 1537 ntBASIC18.72■□□□□ 0.59
SOX2P48431 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX2P48431 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SOX2P48431 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX2P48431 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SOX2P48431 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
SOX2P48431 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SOX2P48431 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SOX2P48431 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SOX2P48431 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC18.71■□□□□ 0.59
SOX2P48431 EI24-211ENST00000534546 1544 ntTSL 2 BASIC18.71■□□□□ 0.59
SOX2P48431 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SOX2P48431 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC18.71■□□□□ 0.59
SOX2P48431 AC104564.3-201ENST00000582367 638 ntBASIC18.71■□□□□ 0.59
SOX2P48431 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC18.71■□□□□ 0.59
SOX2P48431 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SOX2P48431 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SOX2P48431 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SOX2P48431 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SOX2P48431 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
SOX2P48431 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
SOX2P48431 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SOX2P48431 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SOX2P48431 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC18.7■□□□□ 0.58
SOX2P48431 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SOX2P48431 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SOX2P48431 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
SOX2P48431 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC18.7■□□□□ 0.58
SOX2P48431 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC18.7■□□□□ 0.58
SOX2P48431 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC18.7■□□□□ 0.58
SOX2P48431 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC18.7■□□□□ 0.58
SOX2P48431 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC18.7■□□□□ 0.58
SOX2P48431 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
SOX2P48431 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC18.7■□□□□ 0.58
SOX2P48431 pRNA.6-201ENST00000610482 90 ntBASIC18.7■□□□□ 0.58
SOX2P48431 pRNA.5-201ENST00000612139 90 ntBASIC18.7■□□□□ 0.58
SOX2P48431 pRNA.11-201ENST00000618423 90 ntBASIC18.7■□□□□ 0.58
SOX2P48431 pRNA.13-201ENST00000619112 90 ntBASIC18.7■□□□□ 0.58
SOX2P48431 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SOX2P48431 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC18.7■□□□□ 0.58
SOX2P48431 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SOX2P48431 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.69■□□□□ 0.58
SOX2P48431 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SOX2P48431 KCNQ5-201ENST00000342056 6688 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
SOX2P48431 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
SOX2P48431 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC18.69■□□□□ 0.58
SOX2P48431 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
SOX2P48431 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
SOX2P48431 AC006455.2-201ENST00000429931 906 ntBASIC18.69■□□□□ 0.58
SOX2P48431 AC241377.3-202ENST00000626088 1088 ntBASIC18.69■□□□□ 0.58
SOX2P48431 AC241585.3-202ENST00000628937 1088 ntBASIC18.69■□□□□ 0.58
SOX2P48431 AC245100.8-202ENST00000629247 1058 ntBASIC18.69■□□□□ 0.58
SOX2P48431 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.69■□□□□ 0.58
SOX2P48431 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
SOX2P48431 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SOX2P48431 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
SOX2P48431 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
SOX2P48431 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC18.69■□□□□ 0.58
SOX2P48431 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
SOX2P48431 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.69■□□□□ 0.58
SOX2P48431 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC18.68■□□□□ 0.58
SOX2P48431 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SOX2P48431 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
SOX2P48431 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC18.68■□□□□ 0.58
SOX2P48431 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC18.68■□□□□ 0.58
SOX2P48431 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
SOX2P48431 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SOX2P48431 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
SOX2P48431 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SOX2P48431 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SOX2P48431 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.68■□□□□ 0.58
SOX2P48431 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
SOX2P48431 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SOX2P48431 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
SOX2P48431 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC18.68■□□□□ 0.58
SOX2P48431 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
SOX2P48431 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
SOX2P48431 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.67■□□□□ 0.58
SOX2P48431 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
SOX2P48431 MFF-203ENST00000349901 1716 ntTSL 2 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms