Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDX1P47902 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDX1P47902 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDX1P47902 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDX1P47902 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDX1P47902 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC17.26■□□□□ 0.35
CDX1P47902 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC17.26■□□□□ 0.35
CDX1P47902 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDX1P47902 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
CDX1P47902 MPST-208ENST00000628507 698 ntTSL 5 BASIC17.26■□□□□ 0.35
CDX1P47902 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CDX1P47902 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CDX1P47902 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
CDX1P47902 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDX1P47902 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC17.26■□□□□ 0.35
CDX1P47902 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC17.26■□□□□ 0.35
CDX1P47902 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDX1P47902 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDX1P47902 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDX1P47902 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDX1P47902 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDX1P47902 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDX1P47902 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDX1P47902 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC17.25■□□□□ 0.35
CDX1P47902 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC17.25■□□□□ 0.35
CDX1P47902 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDX1P47902 SNX3-202ENST00000349379 890 ntTSL 2 BASIC17.25■□□□□ 0.35
CDX1P47902 AC099791.1-201ENST00000416440 715 ntBASIC17.25■□□□□ 0.35
CDX1P47902 AC105265.2-201ENST00000467189 838 ntBASIC17.25■□□□□ 0.35
CDX1P47902 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC17.25■□□□□ 0.35
CDX1P47902 MAG-206ENST00000597035 542 ntTSL 4 BASIC17.25■□□□□ 0.35
CDX1P47902 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC17.25■□□□□ 0.35
CDX1P47902 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
CDX1P47902 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDX1P47902 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDX1P47902 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC17.25■□□□□ 0.35
CDX1P47902 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDX1P47902 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC17.24■□□□□ 0.35
CDX1P47902 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
CDX1P47902 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDX1P47902 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
CDX1P47902 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDX1P47902 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDX1P47902 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CDX1P47902 GUK1-205ENST00000366722 850 ntTSL 3 BASIC17.24■□□□□ 0.35
CDX1P47902 MIR935-201ENST00000401179 91 ntBASIC17.24■□□□□ 0.35
CDX1P47902 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CDX1P47902 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDX1P47902 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CDX1P47902 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CDX1P47902 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC17.24■□□□□ 0.35
CDX1P47902 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CDX1P47902 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDX1P47902 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC17.23■□□□□ 0.35
CDX1P47902 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDX1P47902 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDX1P47902 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDX1P47902 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDX1P47902 ZNRF2P3-201ENST00000424200 374 ntBASIC17.23■□□□□ 0.35
CDX1P47902 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
CDX1P47902 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC17.23■□□□□ 0.35
CDX1P47902 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
CDX1P47902 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC17.23■□□□□ 0.35
CDX1P47902 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDX1P47902 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDX1P47902 LINC01521-201ENST00000504184 1943 ntBASIC17.23■□□□□ 0.35
CDX1P47902 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDX1P47902 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDX1P47902 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDX1P47902 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC17.22■□□□□ 0.35
CDX1P47902 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDX1P47902 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDX1P47902 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDX1P47902 AC079630.1-202ENST00000618127 1840 ntBASIC17.22■□□□□ 0.35
CDX1P47902 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDX1P47902 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC17.22■□□□□ 0.35
CDX1P47902 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDX1P47902 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC17.22■□□□□ 0.35
CDX1P47902 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
CDX1P47902 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC17.22■□□□□ 0.35
CDX1P47902 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDX1P47902 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDX1P47902 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDX1P47902 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
CDX1P47902 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CDX1P47902 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC17.21■□□□□ 0.35
CDX1P47902 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDX1P47902 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC17.21■□□□□ 0.35
CDX1P47902 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC17.21■□□□□ 0.35
CDX1P47902 C11orf96-202ENST00000528572 1834 ntBASIC17.21■□□□□ 0.35
CDX1P47902 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
CDX1P47902 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CDX1P47902 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
CDX1P47902 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC17.21■□□□□ 0.35
CDX1P47902 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC17.21■□□□□ 0.35
CDX1P47902 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC17.21■□□□□ 0.35
CDX1P47902 RBM38-205ENST00000440234 686 ntTSL 2 BASIC17.21■□□□□ 0.35
CDX1P47902 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
CDX1P47902 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.21■□□□□ 0.35
CDX1P47902 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms