Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC25.66■■□□□ 1.7
SCN4AP35499 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
SCN4AP35499 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
SCN4AP35499 RPPH1-201ENST00000516869 333 ntBASIC25.66■■□□□ 1.7
SCN4AP35499 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
SCN4AP35499 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
SCN4AP35499 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
SCN4AP35499 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC25.65■■□□□ 1.7
SCN4AP35499 C1QBPP2-201ENST00000528754 825 ntBASIC25.65■■□□□ 1.7
SCN4AP35499 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC25.65■■□□□ 1.7
SCN4AP35499 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC25.65■■□□□ 1.7
SCN4AP35499 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC25.65■■□□□ 1.7
SCN4AP35499 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC25.65■■□□□ 1.7
SCN4AP35499 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SCN4AP35499 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SCN4AP35499 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SCN4AP35499 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.7
SCN4AP35499 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
SCN4AP35499 AP006587.3-201ENST00000525742 1516 ntBASIC25.64■■□□□ 1.7
SCN4AP35499 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC25.64■■□□□ 1.7
SCN4AP35499 RBM17P2-201ENST00000616397 1405 ntBASIC25.64■■□□□ 1.7
SCN4AP35499 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
SCN4AP35499 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC25.64■■□□□ 1.7
SCN4AP35499 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
SCN4AP35499 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
SCN4AP35499 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC25.64■■□□□ 1.7
SCN4AP35499 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC25.64■■□□□ 1.7
SCN4AP35499 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
SCN4AP35499 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
SCN4AP35499 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC25.64■■□□□ 1.69
SCN4AP35499 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.69
SCN4AP35499 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC25.64■■□□□ 1.69
SCN4AP35499 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC25.63■■□□□ 1.69
SCN4AP35499 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC25.63■■□□□ 1.69
SCN4AP35499 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC25.63■■□□□ 1.69
SCN4AP35499 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
SCN4AP35499 AC211429.1-201ENST00000415277 523 ntBASIC25.63■■□□□ 1.69
SCN4AP35499 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC25.63■■□□□ 1.69
SCN4AP35499 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC25.63■■□□□ 1.69
SCN4AP35499 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC25.63■■□□□ 1.69
SCN4AP35499 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC25.63■■□□□ 1.69
SCN4AP35499 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
SCN4AP35499 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
SCN4AP35499 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC25.63■■□□□ 1.69
SCN4AP35499 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC25.63■■□□□ 1.69
SCN4AP35499 SNORA78-201ENST00000459373 127 ntBASIC25.63■■□□□ 1.69
SCN4AP35499 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC25.63■■□□□ 1.69
SCN4AP35499 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC25.63■■□□□ 1.69
SCN4AP35499 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC25.62■■□□□ 1.69
SCN4AP35499 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
SCN4AP35499 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC25.62■■□□□ 1.69
SCN4AP35499 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
SCN4AP35499 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
SCN4AP35499 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC25.62■■□□□ 1.69
SCN4AP35499 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
SCN4AP35499 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
SCN4AP35499 AC079089.2-201ENST00000531211 1277 ntBASIC25.62■■□□□ 1.69
SCN4AP35499 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC25.62■■□□□ 1.69
SCN4AP35499 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC25.62■■□□□ 1.69
SCN4AP35499 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC25.62■■□□□ 1.69
SCN4AP35499 FGF8-207ENST00000618991 856 ntTSL 3 BASIC25.62■■□□□ 1.69
SCN4AP35499 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC25.62■■□□□ 1.69
SCN4AP35499 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC25.62■■□□□ 1.69
SCN4AP35499 H19-210ENST00000439725 1929 ntTSL 2 BASIC25.62■■□□□ 1.69
SCN4AP35499 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
SCN4AP35499 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
SCN4AP35499 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC25.61■■□□□ 1.69
SCN4AP35499 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC25.61■■□□□ 1.69
SCN4AP35499 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
SCN4AP35499 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC25.61■■□□□ 1.69
SCN4AP35499 AC120498.10-201ENST00000621827 505 ntBASIC25.61■■□□□ 1.69
SCN4AP35499 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC25.61■■□□□ 1.69
SCN4AP35499 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC25.61■■□□□ 1.69
SCN4AP35499 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC25.61■■□□□ 1.69
SCN4AP35499 DKK3-203ENST00000525493 1326 ntTSL 2 BASIC25.61■■□□□ 1.69
SCN4AP35499 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC25.61■■□□□ 1.69
SCN4AP35499 MDFI-202ENST00000373050 809 ntTSL 2 BASIC25.6■■□□□ 1.69
SCN4AP35499 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
SCN4AP35499 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC25.6■■□□□ 1.69
SCN4AP35499 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SCN4AP35499 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC25.6■■□□□ 1.69
SCN4AP35499 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
SCN4AP35499 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
SCN4AP35499 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SCN4AP35499 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SCN4AP35499 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC25.6■■□□□ 1.69
SCN4AP35499 AC012618.2-201ENST00000428058 849 ntBASIC25.6■■□□□ 1.69
SCN4AP35499 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SCN4AP35499 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC25.6■■□□□ 1.69
SCN4AP35499 SMOX-201ENST00000278795 2164 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
SCN4AP35499 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC25.59■■□□□ 1.69
SCN4AP35499 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC25.59■■□□□ 1.69
SCN4AP35499 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC25.59■■□□□ 1.69
SCN4AP35499 KRT16P2-201ENST00000414673 1423 ntBASIC25.59■■□□□ 1.69
SCN4AP35499 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC25.59■■□□□ 1.69
SCN4AP35499 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
SCN4AP35499 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC25.59■■□□□ 1.69
SCN4AP35499 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
SCN4AP35499 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC25.59■■□□□ 1.69
SCN4AP35499 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms