Protein–RNA interactions for Protein: P31645

SLC6A4, Sodium-dependent serotonin transporter, humanhuman

Predictions only

Length 630 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC6A4P31645 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC22■■□□□ 1.11
SLC6A4P31645 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.99■■□□□ 1.11
SLC6A4P31645 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SLC6A4P31645 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SLC6A4P31645 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
SLC6A4P31645 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SLC6A4P31645 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SLC6A4P31645 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC21.99■■□□□ 1.11
SLC6A4P31645 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
SLC6A4P31645 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.99■■□□□ 1.11
SLC6A4P31645 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.99■■□□□ 1.11
SLC6A4P31645 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.99■■□□□ 1.11
SLC6A4P31645 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.99■■□□□ 1.11
SLC6A4P31645 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SLC6A4P31645 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SLC6A4P31645 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
SLC6A4P31645 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.99■■□□□ 1.11
SLC6A4P31645 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
SLC6A4P31645 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
SLC6A4P31645 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SLC6A4P31645 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SLC6A4P31645 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.98■■□□□ 1.11
SLC6A4P31645 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.98■■□□□ 1.11
SLC6A4P31645 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC21.98■■□□□ 1.11
SLC6A4P31645 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.98■■□□□ 1.11
SLC6A4P31645 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC21.98■■□□□ 1.11
SLC6A4P31645 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
SLC6A4P31645 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
SLC6A4P31645 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.98■■□□□ 1.11
SLC6A4P31645 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
SLC6A4P31645 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC21.98■■□□□ 1.11
SLC6A4P31645 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
SLC6A4P31645 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
SLC6A4P31645 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.97■■□□□ 1.11
SLC6A4P31645 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SLC6A4P31645 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
SLC6A4P31645 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SLC6A4P31645 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.97■■□□□ 1.11
SLC6A4P31645 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SLC6A4P31645 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.97■■□□□ 1.11
SLC6A4P31645 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SLC6A4P31645 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SLC6A4P31645 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC21.97■■□□□ 1.11
SLC6A4P31645 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SLC6A4P31645 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.97■■□□□ 1.11
SLC6A4P31645 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.97■■□□□ 1.11
SLC6A4P31645 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC21.97■■□□□ 1.11
SLC6A4P31645 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SLC6A4P31645 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
SLC6A4P31645 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
SLC6A4P31645 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SLC6A4P31645 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.96■■□□□ 1.11
SLC6A4P31645 FAM99A-202ENST00000538190 1989 ntBASIC21.96■■□□□ 1.11
SLC6A4P31645 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SLC6A4P31645 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.96■■□□□ 1.11
SLC6A4P31645 EEF1DP3-203ENST00000566025 782 ntBASIC21.96■■□□□ 1.11
SLC6A4P31645 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.96■■□□□ 1.11
SLC6A4P31645 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SLC6A4P31645 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.96■■□□□ 1.11
SLC6A4P31645 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC21.96■■□□□ 1.11
SLC6A4P31645 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
SLC6A4P31645 AC003102.1-202ENST00000563394 1796 ntBASIC21.96■■□□□ 1.11
SLC6A4P31645 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SLC6A4P31645 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SLC6A4P31645 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.96■■□□□ 1.11
SLC6A4P31645 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SLC6A4P31645 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.95■■□□□ 1.1
SLC6A4P31645 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.95■■□□□ 1.1
SLC6A4P31645 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SLC6A4P31645 AC016769.1-201ENST00000409132 1010 ntBASIC21.95■■□□□ 1.1
SLC6A4P31645 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.95■■□□□ 1.1
SLC6A4P31645 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.95■■□□□ 1.1
SLC6A4P31645 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SLC6A4P31645 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
SLC6A4P31645 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SLC6A4P31645 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
SLC6A4P31645 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SLC6A4P31645 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
SLC6A4P31645 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.94■■□□□ 1.1
SLC6A4P31645 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SLC6A4P31645 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SLC6A4P31645 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SLC6A4P31645 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SLC6A4P31645 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SLC6A4P31645 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SLC6A4P31645 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.93■■□□□ 1.1
SLC6A4P31645 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
SLC6A4P31645 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC21.93■■□□□ 1.1
SLC6A4P31645 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SLC6A4P31645 AP001160.3-201ENST00000601484 763 ntBASIC21.93■■□□□ 1.1
SLC6A4P31645 WWOX-218ENST00000627394 894 ntTSL 5 BASIC21.93■■□□□ 1.1
SLC6A4P31645 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SLC6A4P31645 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SLC6A4P31645 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SLC6A4P31645 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SLC6A4P31645 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SLC6A4P31645 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SLC6A4P31645 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC21.92■■□□□ 1.1
SLC6A4P31645 AC138907.5-202ENST00000569484 235 ntBASIC21.92■■□□□ 1.1
SLC6A4P31645 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.92■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 404.5 ms