Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC16.23■□□□□ 0.19
HLA-DMBP28068 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC16.23■□□□□ 0.19
HLA-DMBP28068 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
HLA-DMBP28068 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DMBP28068 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DMBP28068 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC16.23■□□□□ 0.19
HLA-DMBP28068 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DMBP28068 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
HLA-DMBP28068 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC16.23■□□□□ 0.19
HLA-DMBP28068 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
HLA-DMBP28068 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC16.22■□□□□ 0.19
HLA-DMBP28068 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC16.22■□□□□ 0.19
HLA-DMBP28068 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
HLA-DMBP28068 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HLA-DMBP28068 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HLA-DMBP28068 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC16.22■□□□□ 0.19
HLA-DMBP28068 PTCHD3P2-201ENST00000424937 1205 ntBASIC16.22■□□□□ 0.19
HLA-DMBP28068 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HLA-DMBP28068 TUB-203ENST00000534099 1759 ntTSL 2 BASIC16.22■□□□□ 0.19
HLA-DMBP28068 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HLA-DMBP28068 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
HLA-DMBP28068 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HLA-DMBP28068 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
HLA-DMBP28068 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
HLA-DMBP28068 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
HLA-DMBP28068 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC16.21■□□□□ 0.19
HLA-DMBP28068 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
HLA-DMBP28068 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DMBP28068 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DMBP28068 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DMBP28068 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC16.21■□□□□ 0.19
HLA-DMBP28068 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC16.21■□□□□ 0.19
HLA-DMBP28068 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DMBP28068 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DMBP28068 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DMBP28068 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DMBP28068 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
HLA-DMBP28068 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC16.21■□□□□ 0.18
HLA-DMBP28068 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
HLA-DMBP28068 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC16.21■□□□□ 0.18
HLA-DMBP28068 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
HLA-DMBP28068 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
HLA-DMBP28068 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.18
HLA-DMBP28068 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HLA-DMBP28068 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC16.2■□□□□ 0.18
HLA-DMBP28068 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HLA-DMBP28068 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC16.2■□□□□ 0.18
HLA-DMBP28068 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC16.2■□□□□ 0.18
HLA-DMBP28068 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HLA-DMBP28068 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.18
HLA-DMBP28068 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC16.2■□□□□ 0.18
HLA-DMBP28068 SERBP1P1-201ENST00000396021 1160 ntBASIC16.2■□□□□ 0.18
HLA-DMBP28068 PBX2P1-201ENST00000493219 1291 ntBASIC16.2■□□□□ 0.18
HLA-DMBP28068 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC16.2■□□□□ 0.18
HLA-DMBP28068 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC16.2■□□□□ 0.18
HLA-DMBP28068 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC16.2■□□□□ 0.18
HLA-DMBP28068 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
HLA-DMBP28068 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HLA-DMBP28068 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
HLA-DMBP28068 FEM1AP4-201ENST00000443167 1987 ntBASIC16.19■□□□□ 0.18
HLA-DMBP28068 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HLA-DMBP28068 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
HLA-DMBP28068 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC16.19■□□□□ 0.18
HLA-DMBP28068 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HLA-DMBP28068 AC010141.3-201ENST00000456659 717 ntBASIC16.19■□□□□ 0.18
HLA-DMBP28068 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HLA-DMBP28068 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HLA-DMBP28068 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HLA-DMBP28068 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
HLA-DMBP28068 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
HLA-DMBP28068 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC16.19■□□□□ 0.18
HLA-DMBP28068 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC16.19■□□□□ 0.18
HLA-DMBP28068 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
HLA-DMBP28068 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC16.18■□□□□ 0.18
HLA-DMBP28068 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DMBP28068 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DMBP28068 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DMBP28068 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DMBP28068 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC16.18■□□□□ 0.18
HLA-DMBP28068 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DMBP28068 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DMBP28068 UNC93B3-201ENST00000308076 687 ntBASIC16.18■□□□□ 0.18
HLA-DMBP28068 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DMBP28068 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
HLA-DMBP28068 HES6-206ENST00000409574 738 ntTSL 2 BASIC16.18■□□□□ 0.18
HLA-DMBP28068 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC16.18■□□□□ 0.18
HLA-DMBP28068 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DMBP28068 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC16.18■□□□□ 0.18
HLA-DMBP28068 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DMBP28068 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
HLA-DMBP28068 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC16.18■□□□□ 0.18
HLA-DMBP28068 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC16.18■□□□□ 0.18
HLA-DMBP28068 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
HLA-DMBP28068 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC16.18■□□□□ 0.18
HLA-DMBP28068 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC16.17■□□□□ 0.18
HLA-DMBP28068 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DMBP28068 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DMBP28068 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
HLA-DMBP28068 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC16.17■□□□□ 0.18
HLA-DMBP28068 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC16.17■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 32.4 ms