Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
SPTA1P02549 AP003733.4-201ENST00000623785 1697 ntBASIC19.46■□□□□ 0.71
SPTA1P02549 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SPTA1P02549 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.7
SPTA1P02549 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SPTA1P02549 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC19.45■□□□□ 0.7
SPTA1P02549 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SPTA1P02549 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SPTA1P02549 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SPTA1P02549 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SPTA1P02549 CDC14B-202ENST00000375241 5589 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SPTA1P02549 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC19.45■□□□□ 0.7
SPTA1P02549 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SPTA1P02549 AC093787.1-201ENST00000450396 207 ntBASIC19.45■□□□□ 0.7
SPTA1P02549 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC19.45■□□□□ 0.7
SPTA1P02549 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SPTA1P02549 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SPTA1P02549 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SPTA1P02549 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SPTA1P02549 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC19.44■□□□□ 0.7
SPTA1P02549 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SPTA1P02549 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
SPTA1P02549 TCEAL6-202ENST00000372774 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SPTA1P02549 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SPTA1P02549 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
SPTA1P02549 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SPTA1P02549 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC19.44■□□□□ 0.7
SPTA1P02549 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SPTA1P02549 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SPTA1P02549 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SPTA1P02549 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SPTA1P02549 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SPTA1P02549 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
SPTA1P02549 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SPTA1P02549 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.44■□□□□ 0.7
SPTA1P02549 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.44■□□□□ 0.7
SPTA1P02549 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC19.44■□□□□ 0.7
SPTA1P02549 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SPTA1P02549 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
SPTA1P02549 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC19.43■□□□□ 0.7
SPTA1P02549 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SPTA1P02549 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC19.43■□□□□ 0.7
SPTA1P02549 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SPTA1P02549 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC19.43■□□□□ 0.7
SPTA1P02549 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.43■□□□□ 0.7
SPTA1P02549 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SPTA1P02549 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.43■□□□□ 0.7
SPTA1P02549 DUSP8P3-201ENST00000399571 1760 ntBASIC19.43■□□□□ 0.7
SPTA1P02549 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC19.43■□□□□ 0.7
SPTA1P02549 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SPTA1P02549 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SPTA1P02549 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.43■□□□□ 0.7
SPTA1P02549 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.43■□□□□ 0.7
SPTA1P02549 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SPTA1P02549 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.43■□□□□ 0.7
SPTA1P02549 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SPTA1P02549 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
SPTA1P02549 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SPTA1P02549 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.42■□□□□ 0.7
SPTA1P02549 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC19.42■□□□□ 0.7
SPTA1P02549 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
SPTA1P02549 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.42■□□□□ 0.7
SPTA1P02549 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC19.42■□□□□ 0.7
SPTA1P02549 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
SPTA1P02549 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SPTA1P02549 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
SPTA1P02549 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
SPTA1P02549 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.41■□□□□ 0.7
SPTA1P02549 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC19.41■□□□□ 0.7
SPTA1P02549 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.41■□□□□ 0.7
SPTA1P02549 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
SPTA1P02549 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
SPTA1P02549 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
SPTA1P02549 H19-210ENST00000439725 1929 ntTSL 2 BASIC19.41■□□□□ 0.7
SPTA1P02549 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SPTA1P02549 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC19.41■□□□□ 0.7
SPTA1P02549 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SPTA1P02549 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
SPTA1P02549 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.41■□□□□ 0.7
SPTA1P02549 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.41■□□□□ 0.7
SPTA1P02549 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SPTA1P02549 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SPTA1P02549 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
SPTA1P02549 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SPTA1P02549 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SPTA1P02549 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SPTA1P02549 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SPTA1P02549 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
SPTA1P02549 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SPTA1P02549 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SPTA1P02549 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.4■□□□□ 0.7
SPTA1P02549 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.4■□□□□ 0.7
SPTA1P02549 AL109797.1-201ENST00000452501 835 ntTSL 2 BASIC19.4■□□□□ 0.7
SPTA1P02549 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
SPTA1P02549 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.4■□□□□ 0.7
SPTA1P02549 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
SPTA1P02549 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SPTA1P02549 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
SPTA1P02549 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
SPTA1P02549 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms