Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC18.74■□□□□ 0.59
LMX1BO60663 AC233992.3-201ENST00000607491 485 ntBASIC18.74■□□□□ 0.59
LMX1BO60663 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
LMX1BO60663 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LMX1BO60663 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LMX1BO60663 FOXO1-201ENST00000379561 5735 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LMX1BO60663 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
LMX1BO60663 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LMX1BO60663 AL024507.2-201ENST00000606070 2574 ntBASIC18.73■□□□□ 0.59
LMX1BO60663 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC18.73■□□□□ 0.59
LMX1BO60663 GRAMD4P2-201ENST00000423297 1097 ntBASIC18.73■□□□□ 0.59
LMX1BO60663 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
LMX1BO60663 MPST-208ENST00000628507 698 ntTSL 5 BASIC18.73■□□□□ 0.59
LMX1BO60663 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
LMX1BO60663 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
LMX1BO60663 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC18.73■□□□□ 0.59
LMX1BO60663 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
LMX1BO60663 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LMX1BO60663 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC18.72■□□□□ 0.59
LMX1BO60663 USP45-205ENST00000472914 1617 ntTSL 5 BASIC18.72■□□□□ 0.59
LMX1BO60663 AK1-201ENST00000223836 736 ntTSL 3 BASIC18.72■□□□□ 0.59
LMX1BO60663 BX842568.3-201ENST00000418104 571 ntBASIC18.72■□□□□ 0.59
LMX1BO60663 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC18.72■□□□□ 0.59
LMX1BO60663 SP2-202ENST00000613139 908 ntTSL 5 BASIC18.72■□□□□ 0.59
LMX1BO60663 EI24-211ENST00000534546 1544 ntTSL 2 BASIC18.72■□□□□ 0.59
LMX1BO60663 GOLGA2P6-201ENST00000340929 2049 ntBASIC18.72■□□□□ 0.59
LMX1BO60663 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
LMX1BO60663 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
LMX1BO60663 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
LMX1BO60663 STX4-202ENST00000394998 1498 ntTSL 2 BASIC18.71■□□□□ 0.59
LMX1BO60663 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
LMX1BO60663 AF106564.1-201ENST00000607058 2553 ntBASIC18.71■□□□□ 0.59
LMX1BO60663 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
LMX1BO60663 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC18.71■□□□□ 0.59
LMX1BO60663 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LMX1BO60663 AC079089.2-201ENST00000531211 1277 ntBASIC18.71■□□□□ 0.59
LMX1BO60663 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC18.71■□□□□ 0.59
LMX1BO60663 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC18.71■□□□□ 0.59
LMX1BO60663 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC18.71■□□□□ 0.59
LMX1BO60663 MIR3181-201ENST00000578512 73 ntBASIC18.71■□□□□ 0.59
LMX1BO60663 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC18.71■□□□□ 0.59
LMX1BO60663 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
LMX1BO60663 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC18.71■□□□□ 0.59
LMX1BO60663 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LMX1BO60663 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
LMX1BO60663 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
LMX1BO60663 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC18.7■□□□□ 0.58
LMX1BO60663 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LMX1BO60663 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC18.7■□□□□ 0.58
LMX1BO60663 AC034268.1-201ENST00000441047 882 ntBASIC18.7■□□□□ 0.58
LMX1BO60663 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LMX1BO60663 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LMX1BO60663 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LMX1BO60663 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LMX1BO60663 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LMX1BO60663 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
LMX1BO60663 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LMX1BO60663 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
LMX1BO60663 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC18.69■□□□□ 0.58
LMX1BO60663 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LMX1BO60663 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
LMX1BO60663 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LMX1BO60663 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LMX1BO60663 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
LMX1BO60663 Z98882.1-201ENST00000622160 2253 ntBASIC18.69■□□□□ 0.58
LMX1BO60663 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
LMX1BO60663 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LMX1BO60663 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LMX1BO60663 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
LMX1BO60663 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LMX1BO60663 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
LMX1BO60663 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
LMX1BO60663 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
LMX1BO60663 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LMX1BO60663 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LMX1BO60663 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1BO60663 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.68■□□□□ 0.58
LMX1BO60663 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1BO60663 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1BO60663 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
LMX1BO60663 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1BO60663 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1BO60663 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC18.68■□□□□ 0.58
LMX1BO60663 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC18.68■□□□□ 0.58
LMX1BO60663 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
LMX1BO60663 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1BO60663 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1BO60663 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1BO60663 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1BO60663 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LMX1BO60663 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.67■□□□□ 0.58
LMX1BO60663 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
LMX1BO60663 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LMX1BO60663 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
LMX1BO60663 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC18.67■□□□□ 0.58
LMX1BO60663 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LMX1BO60663 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LMX1BO60663 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC18.67■□□□□ 0.58
LMX1BO60663 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC18.67■□□□□ 0.58
LMX1BO60663 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms