Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 NTF6A-201ENST00000591175 560 ntBASIC18.26■□□□□ 0.51
XRCC3O43542 AL499627.2-201ENST00000606283 725 ntBASIC18.26■□□□□ 0.51
XRCC3O43542 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC18.26■□□□□ 0.51
XRCC3O43542 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
XRCC3O43542 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC18.26■□□□□ 0.51
XRCC3O43542 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
XRCC3O43542 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
XRCC3O43542 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.26■□□□□ 0.51
XRCC3O43542 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
XRCC3O43542 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
XRCC3O43542 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
XRCC3O43542 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC18.25■□□□□ 0.51
XRCC3O43542 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
XRCC3O43542 OR7E47P-201ENST00000546390 1422 ntBASIC18.25■□□□□ 0.51
XRCC3O43542 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
XRCC3O43542 USP45-205ENST00000472914 1617 ntTSL 5 BASIC18.25■□□□□ 0.51
XRCC3O43542 AC004987.1-201ENST00000428627 508 ntBASIC18.25■□□□□ 0.51
XRCC3O43542 CLTA-206ENST00000466396 695 ntTSL 2 BASIC18.25■□□□□ 0.51
XRCC3O43542 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC18.25■□□□□ 0.51
XRCC3O43542 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC18.25■□□□□ 0.51
XRCC3O43542 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
XRCC3O43542 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
XRCC3O43542 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
XRCC3O43542 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
XRCC3O43542 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
XRCC3O43542 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC18.25■□□□□ 0.51
XRCC3O43542 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
XRCC3O43542 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
XRCC3O43542 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
XRCC3O43542 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
XRCC3O43542 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
XRCC3O43542 EI24-211ENST00000534546 1544 ntTSL 2 BASIC18.24■□□□□ 0.51
XRCC3O43542 VGF-203ENST00000611537 1622 ntTSL 5 BASIC18.24■□□□□ 0.51
XRCC3O43542 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
XRCC3O43542 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC18.24■□□□□ 0.51
XRCC3O43542 AL031602.1-201ENST00000633169 911 ntBASIC18.24■□□□□ 0.51
XRCC3O43542 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
XRCC3O43542 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
XRCC3O43542 PARN-205ENST00000539279 1557 ntTSL 2 BASIC18.24■□□□□ 0.51
XRCC3O43542 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
XRCC3O43542 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
XRCC3O43542 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
XRCC3O43542 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
XRCC3O43542 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC3O43542 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC3O43542 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
XRCC3O43542 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC3O43542 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC3O43542 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC3O43542 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC3O43542 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC18.23■□□□□ 0.51
XRCC3O43542 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC3O43542 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC3O43542 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC18.23■□□□□ 0.51
XRCC3O43542 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
XRCC3O43542 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
XRCC3O43542 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC3O43542 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC3O43542 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC3O43542 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC3O43542 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
XRCC3O43542 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC3O43542 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
XRCC3O43542 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC18.22■□□□□ 0.51
XRCC3O43542 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
XRCC3O43542 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC18.22■□□□□ 0.51
XRCC3O43542 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
XRCC3O43542 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
XRCC3O43542 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
XRCC3O43542 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
XRCC3O43542 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
XRCC3O43542 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC18.22■□□□□ 0.51
XRCC3O43542 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC18.22■□□□□ 0.51
XRCC3O43542 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
XRCC3O43542 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
XRCC3O43542 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
XRCC3O43542 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
XRCC3O43542 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.21■□□□□ 0.51
XRCC3O43542 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
XRCC3O43542 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
XRCC3O43542 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
XRCC3O43542 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
XRCC3O43542 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.21■□□□□ 0.51
XRCC3O43542 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
XRCC3O43542 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
XRCC3O43542 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
XRCC3O43542 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
XRCC3O43542 TK2-216ENST00000564917 1156 ntTSL 3 BASIC18.21■□□□□ 0.51
XRCC3O43542 HSD17B1P1-201ENST00000590052 955 ntBASIC18.21■□□□□ 0.51
XRCC3O43542 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
XRCC3O43542 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
XRCC3O43542 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC18.21■□□□□ 0.51
XRCC3O43542 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
XRCC3O43542 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.21■□□□□ 0.5
XRCC3O43542 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC18.21■□□□□ 0.5
XRCC3O43542 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC18.2■□□□□ 0.5
XRCC3O43542 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC3O43542 GABARAPL3-202ENST00000624044 1851 ntBASIC18.2■□□□□ 0.5
XRCC3O43542 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
XRCC3O43542 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms