Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
TMX2-CTNND1H3BSU7 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
TMX2-CTNND1H3BSU7 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TMX2-CTNND1H3BSU7 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
TMX2-CTNND1H3BSU7 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
TMX2-CTNND1H3BSU7 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
TMX2-CTNND1H3BSU7 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC20.92■□□□□ 0.94
TMX2-CTNND1H3BSU7 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
TMX2-CTNND1H3BSU7 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TMX2-CTNND1H3BSU7 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TMX2-CTNND1H3BSU7 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TMX2-CTNND1H3BSU7 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TMX2-CTNND1H3BSU7 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TMX2-CTNND1H3BSU7 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TMX2-CTNND1H3BSU7 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.91■□□□□ 0.94
TMX2-CTNND1H3BSU7 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TMX2-CTNND1H3BSU7 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
TMX2-CTNND1H3BSU7 AC079140.4-201ENST00000507448 529 ntBASIC20.91■□□□□ 0.94
TMX2-CTNND1H3BSU7 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC20.91■□□□□ 0.94
TMX2-CTNND1H3BSU7 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC20.91■□□□□ 0.94
TMX2-CTNND1H3BSU7 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
TMX2-CTNND1H3BSU7 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TMX2-CTNND1H3BSU7 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TMX2-CTNND1H3BSU7 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TMX2-CTNND1H3BSU7 ATMIN-201ENST00000299575 4884 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TMX2-CTNND1H3BSU7 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.9■□□□□ 0.94
TMX2-CTNND1H3BSU7 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TMX2-CTNND1H3BSU7 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.9■□□□□ 0.94
TMX2-CTNND1H3BSU7 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.9■□□□□ 0.94
TMX2-CTNND1H3BSU7 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC20.9■□□□□ 0.94
TMX2-CTNND1H3BSU7 GXYLT1P5-201ENST00000614548 1189 ntBASIC20.9■□□□□ 0.94
TMX2-CTNND1H3BSU7 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.9■□□□□ 0.94
TMX2-CTNND1H3BSU7 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.94
TMX2-CTNND1H3BSU7 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
TMX2-CTNND1H3BSU7 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
TMX2-CTNND1H3BSU7 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TMX2-CTNND1H3BSU7 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.89■□□□□ 0.93
TMX2-CTNND1H3BSU7 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TMX2-CTNND1H3BSU7 AC006970.2-201ENST00000450065 779 ntBASIC20.89■□□□□ 0.93
TMX2-CTNND1H3BSU7 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TMX2-CTNND1H3BSU7 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.89■□□□□ 0.93
TMX2-CTNND1H3BSU7 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.89■□□□□ 0.93
TMX2-CTNND1H3BSU7 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.89■□□□□ 0.93
TMX2-CTNND1H3BSU7 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC20.89■□□□□ 0.93
TMX2-CTNND1H3BSU7 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.89■□□□□ 0.93
TMX2-CTNND1H3BSU7 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TMX2-CTNND1H3BSU7 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
TMX2-CTNND1H3BSU7 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TMX2-CTNND1H3BSU7 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TMX2-CTNND1H3BSU7 AC127496.7-201ENST00000625110 1798 ntBASIC20.89■□□□□ 0.93
TMX2-CTNND1H3BSU7 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.89■□□□□ 0.93
TMX2-CTNND1H3BSU7 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TMX2-CTNND1H3BSU7 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
TMX2-CTNND1H3BSU7 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TMX2-CTNND1H3BSU7 AL353803.4-201ENST00000565882 1934 ntBASIC20.88■□□□□ 0.93
TMX2-CTNND1H3BSU7 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.88■□□□□ 0.93
TMX2-CTNND1H3BSU7 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.88■□□□□ 0.93
TMX2-CTNND1H3BSU7 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TMX2-CTNND1H3BSU7 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TMX2-CTNND1H3BSU7 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC20.88■□□□□ 0.93
TMX2-CTNND1H3BSU7 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC20.88■□□□□ 0.93
TMX2-CTNND1H3BSU7 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TMX2-CTNND1H3BSU7 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.88■□□□□ 0.93
TMX2-CTNND1H3BSU7 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TMX2-CTNND1H3BSU7 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TMX2-CTNND1H3BSU7 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TMX2-CTNND1H3BSU7 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TMX2-CTNND1H3BSU7 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC20.88■□□□□ 0.93
TMX2-CTNND1H3BSU7 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TMX2-CTNND1H3BSU7 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
TMX2-CTNND1H3BSU7 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TMX2-CTNND1H3BSU7 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TMX2-CTNND1H3BSU7 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TMX2-CTNND1H3BSU7 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
TMX2-CTNND1H3BSU7 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TMX2-CTNND1H3BSU7 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TMX2-CTNND1H3BSU7 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TMX2-CTNND1H3BSU7 PPP1R14BP3-201ENST00000509033 445 ntBASIC20.87■□□□□ 0.93
TMX2-CTNND1H3BSU7 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC20.87■□□□□ 0.93
TMX2-CTNND1H3BSU7 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TMX2-CTNND1H3BSU7 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TMX2-CTNND1H3BSU7 AC009237.3-201ENST00000393279 1427 ntBASIC20.87■□□□□ 0.93
TMX2-CTNND1H3BSU7 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.87■□□□□ 0.93
TMX2-CTNND1H3BSU7 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
TMX2-CTNND1H3BSU7 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
TMX2-CTNND1H3BSU7 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TMX2-CTNND1H3BSU7 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TMX2-CTNND1H3BSU7 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.86■□□□□ 0.93
TMX2-CTNND1H3BSU7 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
TMX2-CTNND1H3BSU7 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.86■□□□□ 0.93
TMX2-CTNND1H3BSU7 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
TMX2-CTNND1H3BSU7 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TMX2-CTNND1H3BSU7 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.85■□□□□ 0.93
TMX2-CTNND1H3BSU7 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TMX2-CTNND1H3BSU7 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TMX2-CTNND1H3BSU7 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TMX2-CTNND1H3BSU7 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC20.85■□□□□ 0.93
TMX2-CTNND1H3BSU7 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.85■□□□□ 0.93
TMX2-CTNND1H3BSU7 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC20.85■□□□□ 0.93
TMX2-CTNND1H3BSU7 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms