Protein–RNA interactions for Protein: Q9Y239

NOD1, Nucleotide-binding oligomerization domain-containing protein 1, humanhuman

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOD1Q9Y239 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC23.66■■□□□ 1.38
NOD1Q9Y239 BET1L-204ENST00000410108 637 ntTSL 3 BASIC23.66■■□□□ 1.38
NOD1Q9Y239 TERF1P5-201ENST00000477545 1207 ntBASIC23.66■■□□□ 1.38
NOD1Q9Y239 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC23.66■■□□□ 1.38
NOD1Q9Y239 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC23.66■■□□□ 1.38
NOD1Q9Y239 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
NOD1Q9Y239 AC066615.1-201ENST00000640911 628 ntBASIC23.66■■□□□ 1.38
NOD1Q9Y239 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
NOD1Q9Y239 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
NOD1Q9Y239 THRA-202ENST00000394121 2260 ntTSL 2 BASIC23.66■■□□□ 1.38
NOD1Q9Y239 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
NOD1Q9Y239 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
NOD1Q9Y239 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
NOD1Q9Y239 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
NOD1Q9Y239 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
NOD1Q9Y239 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
NOD1Q9Y239 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
NOD1Q9Y239 MCHR1-202ENST00000381433 1219 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
NOD1Q9Y239 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
NOD1Q9Y239 AC073210.2-201ENST00000430369 194 ntBASIC23.65■■□□□ 1.38
NOD1Q9Y239 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC23.65■■□□□ 1.38
NOD1Q9Y239 MIR4758-201ENST00000577688 71 ntBASIC23.65■■□□□ 1.38
NOD1Q9Y239 TBCB-214ENST00000629269 413 ntTSL 5 BASIC23.65■■□□□ 1.38
NOD1Q9Y239 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
NOD1Q9Y239 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
NOD1Q9Y239 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
NOD1Q9Y239 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
NOD1Q9Y239 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC23.65■■□□□ 1.38
NOD1Q9Y239 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC23.65■■□□□ 1.38
NOD1Q9Y239 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
NOD1Q9Y239 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC23.65■■□□□ 1.38
NOD1Q9Y239 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
NOD1Q9Y239 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC23.65■■□□□ 1.38
NOD1Q9Y239 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
NOD1Q9Y239 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
NOD1Q9Y239 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC23.64■■□□□ 1.38
NOD1Q9Y239 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC23.64■■□□□ 1.38
NOD1Q9Y239 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC23.64■■□□□ 1.38
NOD1Q9Y239 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.38
NOD1Q9Y239 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC23.64■■□□□ 1.37
NOD1Q9Y239 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC23.64■■□□□ 1.37
NOD1Q9Y239 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
NOD1Q9Y239 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC23.64■■□□□ 1.37
NOD1Q9Y239 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
NOD1Q9Y239 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC23.64■■□□□ 1.37
NOD1Q9Y239 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
NOD1Q9Y239 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
NOD1Q9Y239 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC23.63■■□□□ 1.37
NOD1Q9Y239 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NOD1Q9Y239 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC23.63■■□□□ 1.37
NOD1Q9Y239 SMOX-202ENST00000305958 2233 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NOD1Q9Y239 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NOD1Q9Y239 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NOD1Q9Y239 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC23.63■■□□□ 1.37
NOD1Q9Y239 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC23.63■■□□□ 1.37
NOD1Q9Y239 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC23.63■■□□□ 1.37
NOD1Q9Y239 ZFP91-CNTF-201ENST00000389919 2319 ntAPPRIS P5 TSL 2 BASIC23.63■■□□□ 1.37
NOD1Q9Y239 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
NOD1Q9Y239 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
NOD1Q9Y239 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC23.63■■□□□ 1.37
NOD1Q9Y239 AC098934.4-201ENST00000564127 592 ntBASIC23.63■■□□□ 1.37
NOD1Q9Y239 SLC7A5P1-201ENST00000568957 537 ntBASIC23.63■■□□□ 1.37
NOD1Q9Y239 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC23.63■■□□□ 1.37
NOD1Q9Y239 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC23.63■■□□□ 1.37
NOD1Q9Y239 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC23.63■■□□□ 1.37
NOD1Q9Y239 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
NOD1Q9Y239 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NOD1Q9Y239 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
NOD1Q9Y239 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
NOD1Q9Y239 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
NOD1Q9Y239 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC23.62■■□□□ 1.37
NOD1Q9Y239 NAA20-201ENST00000310450 920 ntTSL 2 BASIC23.62■■□□□ 1.37
NOD1Q9Y239 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC23.62■■□□□ 1.37
NOD1Q9Y239 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC23.62■■□□□ 1.37
NOD1Q9Y239 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
NOD1Q9Y239 CYP2T1P-201ENST00000432607 1285 ntBASIC23.62■■□□□ 1.37
NOD1Q9Y239 AC053503.5-201ENST00000601508 636 ntBASIC23.62■■□□□ 1.37
NOD1Q9Y239 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC23.62■■□□□ 1.37
NOD1Q9Y239 AC008694.1-202ENST00000636953 945 ntBASIC23.62■■□□□ 1.37
NOD1Q9Y239 MKRN4P-201ENST00000444706 1521 ntBASIC23.62■■□□□ 1.37
NOD1Q9Y239 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC23.62■■□□□ 1.37
NOD1Q9Y239 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC23.62■■□□□ 1.37
NOD1Q9Y239 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
NOD1Q9Y239 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC23.62■■□□□ 1.37
NOD1Q9Y239 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
NOD1Q9Y239 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
NOD1Q9Y239 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC23.61■■□□□ 1.37
NOD1Q9Y239 AP006587.3-201ENST00000525742 1516 ntBASIC23.61■■□□□ 1.37
NOD1Q9Y239 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
NOD1Q9Y239 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
NOD1Q9Y239 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC23.61■■□□□ 1.37
NOD1Q9Y239 EEF1DP3-203ENST00000566025 782 ntBASIC23.61■■□□□ 1.37
NOD1Q9Y239 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC23.61■■□□□ 1.37
NOD1Q9Y239 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
NOD1Q9Y239 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC23.61■■□□□ 1.37
NOD1Q9Y239 AC120498.10-201ENST00000621827 505 ntBASIC23.61■■□□□ 1.37
NOD1Q9Y239 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC23.61■■□□□ 1.37
NOD1Q9Y239 LINC00526-201ENST00000581067 1875 ntBASIC23.61■■□□□ 1.37
NOD1Q9Y239 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC23.61■■□□□ 1.37
NOD1Q9Y239 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms