Protein–RNA interactions for Protein: Q9UM47

NOTCH3, Neurogenic locus notch homolog protein 3, humanhuman

Predictions only

Length 2,321 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3Q9UM47 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC16.43■□□□□ 0.22
NOTCH3Q9UM47 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
NOTCH3Q9UM47 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
NOTCH3Q9UM47 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
NOTCH3Q9UM47 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC16.43■□□□□ 0.22
NOTCH3Q9UM47 SLC7A5P2-201ENST00000553010 536 ntBASIC16.43■□□□□ 0.22
NOTCH3Q9UM47 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC16.43■□□□□ 0.22
NOTCH3Q9UM47 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC16.43■□□□□ 0.22
NOTCH3Q9UM47 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
NOTCH3Q9UM47 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
NOTCH3Q9UM47 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
NOTCH3Q9UM47 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
NOTCH3Q9UM47 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
NOTCH3Q9UM47 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 KRT18P6-201ENST00000555540 1265 ntBASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 AC068587.7-201ENST00000641602 218 ntBASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 MYCNOS-205ENST00000641950 531 ntBASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 AL139125.2-201ENST00000623134 1869 ntBASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 CASK-201ENST00000378154 2494 ntTSL 5 BASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 AC079140.4-201ENST00000507448 529 ntBASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
NOTCH3Q9UM47 PRORSD1P-201ENST00000295112 541 ntBASIC16.41■□□□□ 0.22
NOTCH3Q9UM47 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC16.41■□□□□ 0.22
NOTCH3Q9UM47 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
NOTCH3Q9UM47 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
NOTCH3Q9UM47 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC16.41■□□□□ 0.22
NOTCH3Q9UM47 AC005181.1-201ENST00000604782 1256 ntBASIC16.41■□□□□ 0.22
NOTCH3Q9UM47 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NOTCH3Q9UM47 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NOTCH3Q9UM47 THRA-202ENST00000394121 2260 ntTSL 2 BASIC16.41■□□□□ 0.22
NOTCH3Q9UM47 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NOTCH3Q9UM47 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
NOTCH3Q9UM47 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC16.41■□□□□ 0.22
NOTCH3Q9UM47 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NOTCH3Q9UM47 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
NOTCH3Q9UM47 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC16.41■□□□□ 0.22
NOTCH3Q9UM47 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC16.41■□□□□ 0.22
NOTCH3Q9UM47 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
NOTCH3Q9UM47 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 AC009237.3-201ENST00000393279 1427 ntBASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 TSPY6P-201ENST00000448518 926 ntBASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 TFG-210ENST00000620299 1289 ntTSL 5 BASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NOTCH3Q9UM47 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
NOTCH3Q9UM47 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
NOTCH3Q9UM47 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
NOTCH3Q9UM47 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
NOTCH3Q9UM47 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
NOTCH3Q9UM47 PARP1-202ENST00000366792 553 ntTSL 3 BASIC16.39■□□□□ 0.21
NOTCH3Q9UM47 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC16.39■□□□□ 0.21
NOTCH3Q9UM47 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC16.39■□□□□ 0.21
NOTCH3Q9UM47 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC16.39■□□□□ 0.21
NOTCH3Q9UM47 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
NOTCH3Q9UM47 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC16.39■□□□□ 0.21
NOTCH3Q9UM47 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC16.39■□□□□ 0.21
NOTCH3Q9UM47 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
NOTCH3Q9UM47 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
NOTCH3Q9UM47 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms