Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC22.29■■□□□ 1.16
DDX56Q9NY93 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
DDX56Q9NY93 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC22.29■■□□□ 1.16
DDX56Q9NY93 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
DDX56Q9NY93 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC22.29■■□□□ 1.16
DDX56Q9NY93 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC22.29■■□□□ 1.16
DDX56Q9NY93 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC22.29■■□□□ 1.16
DDX56Q9NY93 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
DDX56Q9NY93 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC22.29■■□□□ 1.16
DDX56Q9NY93 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC22.29■■□□□ 1.16
DDX56Q9NY93 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC22.28■■□□□ 1.16
DDX56Q9NY93 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
DDX56Q9NY93 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
DDX56Q9NY93 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC22.28■■□□□ 1.16
DDX56Q9NY93 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC22.28■■□□□ 1.16
DDX56Q9NY93 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
DDX56Q9NY93 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC22.28■■□□□ 1.16
DDX56Q9NY93 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC22.28■■□□□ 1.16
DDX56Q9NY93 AL136162.1-201ENST00000607711 1078 ntBASIC22.28■■□□□ 1.16
DDX56Q9NY93 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC22.28■■□□□ 1.16
DDX56Q9NY93 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC22.28■■□□□ 1.16
DDX56Q9NY93 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC22.28■■□□□ 1.16
DDX56Q9NY93 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
DDX56Q9NY93 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC22.27■■□□□ 1.16
DDX56Q9NY93 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
DDX56Q9NY93 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
DDX56Q9NY93 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
DDX56Q9NY93 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC22.27■■□□□ 1.16
DDX56Q9NY93 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC22.27■■□□□ 1.16
DDX56Q9NY93 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
DDX56Q9NY93 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC22.27■■□□□ 1.16
DDX56Q9NY93 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC22.27■■□□□ 1.16
DDX56Q9NY93 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC22.27■■□□□ 1.16
DDX56Q9NY93 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC22.27■■□□□ 1.16
DDX56Q9NY93 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC22.27■■□□□ 1.16
DDX56Q9NY93 AC233992.3-201ENST00000607491 485 ntBASIC22.27■■□□□ 1.16
DDX56Q9NY93 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
DDX56Q9NY93 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC22.27■■□□□ 1.16
DDX56Q9NY93 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC22.27■■□□□ 1.15
DDX56Q9NY93 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC22.26■■□□□ 1.15
DDX56Q9NY93 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
DDX56Q9NY93 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC22.26■■□□□ 1.15
DDX56Q9NY93 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC22.26■■□□□ 1.15
DDX56Q9NY93 MFF-203ENST00000349901 1716 ntTSL 2 BASIC22.26■■□□□ 1.15
DDX56Q9NY93 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC22.26■■□□□ 1.15
DDX56Q9NY93 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
DDX56Q9NY93 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
DDX56Q9NY93 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
DDX56Q9NY93 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC22.26■■□□□ 1.15
DDX56Q9NY93 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
DDX56Q9NY93 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
DDX56Q9NY93 AC024257.2-201ENST00000549699 147 ntBASIC22.26■■□□□ 1.15
DDX56Q9NY93 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC22.26■■□□□ 1.15
DDX56Q9NY93 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
DDX56Q9NY93 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
DDX56Q9NY93 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
DDX56Q9NY93 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
DDX56Q9NY93 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
DDX56Q9NY93 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
DDX56Q9NY93 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC22.25■■□□□ 1.15
DDX56Q9NY93 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC22.25■■□□□ 1.15
DDX56Q9NY93 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
DDX56Q9NY93 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
DDX56Q9NY93 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
DDX56Q9NY93 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC22.25■■□□□ 1.15
DDX56Q9NY93 AC133561.4-201ENST00000566112 224 ntBASIC22.25■■□□□ 1.15
DDX56Q9NY93 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC22.25■■□□□ 1.15
DDX56Q9NY93 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC22.25■■□□□ 1.15
DDX56Q9NY93 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
DDX56Q9NY93 AC135279.3-201ENST00000610945 1311 ntBASIC22.25■■□□□ 1.15
DDX56Q9NY93 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC22.25■■□□□ 1.15
DDX56Q9NY93 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC22.24■■□□□ 1.15
DDX56Q9NY93 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
DDX56Q9NY93 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC22.24■■□□□ 1.15
DDX56Q9NY93 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
DDX56Q9NY93 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC22.24■■□□□ 1.15
DDX56Q9NY93 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC22.24■■□□□ 1.15
DDX56Q9NY93 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC22.24■■□□□ 1.15
DDX56Q9NY93 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC22.24■■□□□ 1.15
DDX56Q9NY93 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
DDX56Q9NY93 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC22.23■■□□□ 1.15
DDX56Q9NY93 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC22.23■■□□□ 1.15
DDX56Q9NY93 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
DDX56Q9NY93 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC22.23■■□□□ 1.15
DDX56Q9NY93 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC22.23■■□□□ 1.15
DDX56Q9NY93 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC22.23■■□□□ 1.15
DDX56Q9NY93 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
DDX56Q9NY93 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC22.23■■□□□ 1.15
DDX56Q9NY93 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC22.23■■□□□ 1.15
DDX56Q9NY93 AC008406.3-201ENST00000620001 1374 ntBASIC22.23■■□□□ 1.15
DDX56Q9NY93 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC22.23■■□□□ 1.15
DDX56Q9NY93 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
DDX56Q9NY93 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
DDX56Q9NY93 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
DDX56Q9NY93 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC22.22■■□□□ 1.15
DDX56Q9NY93 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC22.22■■□□□ 1.15
DDX56Q9NY93 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC22.22■■□□□ 1.15
DDX56Q9NY93 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC22.22■■□□□ 1.15
DDX56Q9NY93 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.22■■□□□ 1.15
DDX56Q9NY93 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms