Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
DDX28Q9NUL7 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
DDX28Q9NUL7 HSD11B1L-203ENST00000342970 1620 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
DDX28Q9NUL7 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
DDX28Q9NUL7 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
DDX28Q9NUL7 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC19.43■□□□□ 0.7
DDX28Q9NUL7 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
DDX28Q9NUL7 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
DDX28Q9NUL7 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
DDX28Q9NUL7 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
DDX28Q9NUL7 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
DDX28Q9NUL7 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
DDX28Q9NUL7 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC19.43■□□□□ 0.7
DDX28Q9NUL7 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
DDX28Q9NUL7 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC19.43■□□□□ 0.7
DDX28Q9NUL7 UNC93B8-201ENST00000511903 705 ntBASIC19.43■□□□□ 0.7
DDX28Q9NUL7 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
DDX28Q9NUL7 DUX4L4-201ENST00000566884 1269 ntBASIC19.43■□□□□ 0.7
DDX28Q9NUL7 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
DDX28Q9NUL7 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
DDX28Q9NUL7 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
DDX28Q9NUL7 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
DDX28Q9NUL7 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
DDX28Q9NUL7 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC19.42■□□□□ 0.7
DDX28Q9NUL7 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
DDX28Q9NUL7 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC19.42■□□□□ 0.7
DDX28Q9NUL7 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC19.42■□□□□ 0.7
DDX28Q9NUL7 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
DDX28Q9NUL7 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
DDX28Q9NUL7 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
DDX28Q9NUL7 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC19.42■□□□□ 0.7
DDX28Q9NUL7 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC19.42■□□□□ 0.7
DDX28Q9NUL7 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
DDX28Q9NUL7 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.42■□□□□ 0.7
DDX28Q9NUL7 AC008406.3-201ENST00000620001 1374 ntBASIC19.42■□□□□ 0.7
DDX28Q9NUL7 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
DDX28Q9NUL7 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.42■□□□□ 0.7
DDX28Q9NUL7 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
DDX28Q9NUL7 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
DDX28Q9NUL7 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
DDX28Q9NUL7 FBXW4P1-201ENST00000426721 2239 ntBASIC19.41■□□□□ 0.7
DDX28Q9NUL7 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
DDX28Q9NUL7 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
DDX28Q9NUL7 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.41■□□□□ 0.7
DDX28Q9NUL7 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
DDX28Q9NUL7 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
DDX28Q9NUL7 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
DDX28Q9NUL7 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC19.41■□□□□ 0.7
DDX28Q9NUL7 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
DDX28Q9NUL7 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
DDX28Q9NUL7 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
DDX28Q9NUL7 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
DDX28Q9NUL7 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
DDX28Q9NUL7 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
DDX28Q9NUL7 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
DDX28Q9NUL7 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC19.41■□□□□ 0.7
DDX28Q9NUL7 MIR6724-1-201ENST00000616420 92 ntBASIC19.41■□□□□ 0.7
DDX28Q9NUL7 MIR6724-2-201ENST00000616483 92 ntBASIC19.41■□□□□ 0.7
DDX28Q9NUL7 MIR6724-4-201ENST00000617390 92 ntBASIC19.41■□□□□ 0.7
DDX28Q9NUL7 MIR6724-3-201ENST00000622482 92 ntBASIC19.41■□□□□ 0.7
DDX28Q9NUL7 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
DDX28Q9NUL7 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
DDX28Q9NUL7 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
DDX28Q9NUL7 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
DDX28Q9NUL7 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
DDX28Q9NUL7 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.41■□□□□ 0.7
DDX28Q9NUL7 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
DDX28Q9NUL7 C17orf82-201ENST00000623772 1530 ntBASIC19.41■□□□□ 0.7
DDX28Q9NUL7 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
DDX28Q9NUL7 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
DDX28Q9NUL7 AC007952.6-201ENST00000573168 2673 ntBASIC19.4■□□□□ 0.7
DDX28Q9NUL7 AC003957.1-201ENST00000625108 2673 ntBASIC19.4■□□□□ 0.7
DDX28Q9NUL7 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC19.4■□□□□ 0.7
DDX28Q9NUL7 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
DDX28Q9NUL7 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
DDX28Q9NUL7 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
DDX28Q9NUL7 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
DDX28Q9NUL7 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.4■□□□□ 0.7
DDX28Q9NUL7 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC19.4■□□□□ 0.7
DDX28Q9NUL7 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC19.4■□□□□ 0.7
DDX28Q9NUL7 GRAMD4P7-201ENST00000578182 1232 ntBASIC19.4■□□□□ 0.7
DDX28Q9NUL7 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
DDX28Q9NUL7 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC19.4■□□□□ 0.7
DDX28Q9NUL7 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
DDX28Q9NUL7 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
DDX28Q9NUL7 AF106564.1-201ENST00000607058 2553 ntBASIC19.4■□□□□ 0.7
DDX28Q9NUL7 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
DDX28Q9NUL7 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
DDX28Q9NUL7 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
DDX28Q9NUL7 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
DDX28Q9NUL7 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
DDX28Q9NUL7 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
DDX28Q9NUL7 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
DDX28Q9NUL7 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
DDX28Q9NUL7 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
DDX28Q9NUL7 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
DDX28Q9NUL7 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
DDX28Q9NUL7 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
DDX28Q9NUL7 NKILA-201ENST00000613231 537 ntTSL 4 BASIC19.39■□□□□ 0.69
DDX28Q9NUL7 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms