Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CLIP3Q96DZ5 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CLIP3Q96DZ5 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CLIP3Q96DZ5 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
CLIP3Q96DZ5 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CLIP3Q96DZ5 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC20.55■□□□□ 0.88
CLIP3Q96DZ5 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.55■□□□□ 0.88
CLIP3Q96DZ5 AC090192.1-201ENST00000517740 490 ntBASIC20.55■□□□□ 0.88
CLIP3Q96DZ5 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
CLIP3Q96DZ5 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC20.55■□□□□ 0.88
CLIP3Q96DZ5 USP48-205ENST00000421625 2818 ntTSL 2 BASIC20.55■□□□□ 0.88
CLIP3Q96DZ5 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CLIP3Q96DZ5 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.55■□□□□ 0.88
CLIP3Q96DZ5 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CLIP3Q96DZ5 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.55■□□□□ 0.88
CLIP3Q96DZ5 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.55■□□□□ 0.88
CLIP3Q96DZ5 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.54■□□□□ 0.88
CLIP3Q96DZ5 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CLIP3Q96DZ5 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLIP3Q96DZ5 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.54■□□□□ 0.88
CLIP3Q96DZ5 AC016769.1-201ENST00000409132 1010 ntBASIC20.54■□□□□ 0.88
CLIP3Q96DZ5 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.54■□□□□ 0.88
CLIP3Q96DZ5 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC20.54■□□□□ 0.88
CLIP3Q96DZ5 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLIP3Q96DZ5 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CLIP3Q96DZ5 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.54■□□□□ 0.88
CLIP3Q96DZ5 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CLIP3Q96DZ5 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
CLIP3Q96DZ5 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLIP3Q96DZ5 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CLIP3Q96DZ5 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLIP3Q96DZ5 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CLIP3Q96DZ5 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CLIP3Q96DZ5 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLIP3Q96DZ5 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
CLIP3Q96DZ5 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC20.53■□□□□ 0.88
CLIP3Q96DZ5 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC20.53■□□□□ 0.88
CLIP3Q96DZ5 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC20.53■□□□□ 0.88
CLIP3Q96DZ5 AC079140.4-201ENST00000507448 529 ntBASIC20.53■□□□□ 0.88
CLIP3Q96DZ5 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CLIP3Q96DZ5 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC20.53■□□□□ 0.88
CLIP3Q96DZ5 AC137761.2-201ENST00000561729 223 ntBASIC20.53■□□□□ 0.88
CLIP3Q96DZ5 AC145350.3-201ENST00000569033 163 ntBASIC20.53■□□□□ 0.88
CLIP3Q96DZ5 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CLIP3Q96DZ5 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC20.53■□□□□ 0.88
CLIP3Q96DZ5 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.53■□□□□ 0.88
CLIP3Q96DZ5 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.53■□□□□ 0.88
CLIP3Q96DZ5 PKD1P6-201ENST00000343738 4769 ntBASIC20.52■□□□□ 0.88
CLIP3Q96DZ5 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CLIP3Q96DZ5 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.52■□□□□ 0.88
CLIP3Q96DZ5 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
CLIP3Q96DZ5 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CLIP3Q96DZ5 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
CLIP3Q96DZ5 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
CLIP3Q96DZ5 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CLIP3Q96DZ5 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CLIP3Q96DZ5 AC004854.2-201ENST00000608450 1441 ntBASIC20.52■□□□□ 0.87
CLIP3Q96DZ5 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CLIP3Q96DZ5 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.52■□□□□ 0.87
CLIP3Q96DZ5 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
CLIP3Q96DZ5 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CLIP3Q96DZ5 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
CLIP3Q96DZ5 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLIP3Q96DZ5 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
CLIP3Q96DZ5 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLIP3Q96DZ5 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.51■□□□□ 0.87
CLIP3Q96DZ5 AC079089.2-201ENST00000531211 1277 ntBASIC20.51■□□□□ 0.87
CLIP3Q96DZ5 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.51■□□□□ 0.87
CLIP3Q96DZ5 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CLIP3Q96DZ5 COMT-203ENST00000403184 2217 ntTSL 2 BASIC20.51■□□□□ 0.87
CLIP3Q96DZ5 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
CLIP3Q96DZ5 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLIP3Q96DZ5 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
CLIP3Q96DZ5 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLIP3Q96DZ5 AP004607.4-201ENST00000530158 1459 ntBASIC20.5■□□□□ 0.87
CLIP3Q96DZ5 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.5■□□□□ 0.87
CLIP3Q96DZ5 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLIP3Q96DZ5 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CLIP3Q96DZ5 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.5■□□□□ 0.87
CLIP3Q96DZ5 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC20.5■□□□□ 0.87
CLIP3Q96DZ5 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.5■□□□□ 0.87
CLIP3Q96DZ5 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC20.5■□□□□ 0.87
CLIP3Q96DZ5 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.5■□□□□ 0.87
CLIP3Q96DZ5 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.5■□□□□ 0.87
CLIP3Q96DZ5 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CLIP3Q96DZ5 AC009237.3-201ENST00000393279 1427 ntBASIC20.5■□□□□ 0.87
CLIP3Q96DZ5 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CLIP3Q96DZ5 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.5■□□□□ 0.87
CLIP3Q96DZ5 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.5■□□□□ 0.87
CLIP3Q96DZ5 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLIP3Q96DZ5 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.49■□□□□ 0.87
CLIP3Q96DZ5 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC20.49■□□□□ 0.87
CLIP3Q96DZ5 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLIP3Q96DZ5 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CLIP3Q96DZ5 ME3-201ENST00000323418 1068 ntTSL 5 BASIC20.49■□□□□ 0.87
CLIP3Q96DZ5 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
CLIP3Q96DZ5 KRT19P1-201ENST00000405746 1186 ntBASIC20.49■□□□□ 0.87
CLIP3Q96DZ5 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC20.49■□□□□ 0.87
CLIP3Q96DZ5 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.49■□□□□ 0.87
CLIP3Q96DZ5 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms