Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
SMC1BQ8NDV3 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
SMC1BQ8NDV3 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC25.67■■□□□ 1.7
SMC1BQ8NDV3 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC25.67■■□□□ 1.7
SMC1BQ8NDV3 MDFI-202ENST00000373050 809 ntTSL 2 BASIC25.67■■□□□ 1.7
SMC1BQ8NDV3 RCN1P1-201ENST00000400413 996 ntBASIC25.67■■□□□ 1.7
SMC1BQ8NDV3 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC25.67■■□□□ 1.7
SMC1BQ8NDV3 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC25.67■■□□□ 1.7
SMC1BQ8NDV3 NT5C-211ENST00000582170 653 ntTSL 3 BASIC25.67■■□□□ 1.7
SMC1BQ8NDV3 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC25.67■■□□□ 1.7
SMC1BQ8NDV3 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC25.67■■□□□ 1.7
SMC1BQ8NDV3 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC25.66■■□□□ 1.7
SMC1BQ8NDV3 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC25.66■■□□□ 1.7
SMC1BQ8NDV3 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC25.66■■□□□ 1.7
SMC1BQ8NDV3 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
SMC1BQ8NDV3 HP1BP3-202ENST00000375000 928 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
SMC1BQ8NDV3 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
SMC1BQ8NDV3 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC25.66■■□□□ 1.7
SMC1BQ8NDV3 GATS-209ENST00000454084 1030 ntTSL 3 BASIC25.66■■□□□ 1.7
SMC1BQ8NDV3 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC25.66■■□□□ 1.7
SMC1BQ8NDV3 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
SMC1BQ8NDV3 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC25.66■■□□□ 1.7
SMC1BQ8NDV3 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC25.66■■□□□ 1.7
SMC1BQ8NDV3 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC25.66■■□□□ 1.7
SMC1BQ8NDV3 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
SMC1BQ8NDV3 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SMC1BQ8NDV3 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SMC1BQ8NDV3 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SMC1BQ8NDV3 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC25.65■■□□□ 1.7
SMC1BQ8NDV3 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SMC1BQ8NDV3 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC25.65■■□□□ 1.7
SMC1BQ8NDV3 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
SMC1BQ8NDV3 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
SMC1BQ8NDV3 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
SMC1BQ8NDV3 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
SMC1BQ8NDV3 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SMC1BQ8NDV3 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC25.65■■□□□ 1.7
SMC1BQ8NDV3 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
SMC1BQ8NDV3 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC25.64■■□□□ 1.7
SMC1BQ8NDV3 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC25.64■■□□□ 1.7
SMC1BQ8NDV3 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
SMC1BQ8NDV3 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
SMC1BQ8NDV3 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC25.64■■□□□ 1.7
SMC1BQ8NDV3 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC25.64■■□□□ 1.7
SMC1BQ8NDV3 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC25.64■■□□□ 1.7
SMC1BQ8NDV3 RN7SL471P-201ENST00000580476 299 ntBASIC25.64■■□□□ 1.7
SMC1BQ8NDV3 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC25.64■■□□□ 1.69
SMC1BQ8NDV3 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC25.64■■□□□ 1.69
SMC1BQ8NDV3 KRT17P2-201ENST00000300992 1314 ntBASIC25.63■■□□□ 1.69
SMC1BQ8NDV3 NAA20-201ENST00000310450 920 ntTSL 2 BASIC25.63■■□□□ 1.69
SMC1BQ8NDV3 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
SMC1BQ8NDV3 FXN-202ENST00000396364 980 ntTSL 5 BASIC25.63■■□□□ 1.69
SMC1BQ8NDV3 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC25.63■■□□□ 1.69
SMC1BQ8NDV3 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC25.63■■□□□ 1.69
SMC1BQ8NDV3 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
SMC1BQ8NDV3 KRT18P35-201ENST00000510488 1269 ntBASIC25.63■■□□□ 1.69
SMC1BQ8NDV3 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC25.63■■□□□ 1.69
SMC1BQ8NDV3 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC25.63■■□□□ 1.69
SMC1BQ8NDV3 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
SMC1BQ8NDV3 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
SMC1BQ8NDV3 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
SMC1BQ8NDV3 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
SMC1BQ8NDV3 SMG1P1-207ENST00000446662 852 ntTSL 5 BASIC25.62■■□□□ 1.69
SMC1BQ8NDV3 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC25.62■■□□□ 1.69
SMC1BQ8NDV3 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC25.62■■□□□ 1.69
SMC1BQ8NDV3 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
SMC1BQ8NDV3 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC25.62■■□□□ 1.69
SMC1BQ8NDV3 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC25.62■■□□□ 1.69
SMC1BQ8NDV3 CREM-210ENST00000374721 2020 ntTSL 5 BASIC25.61■■□□□ 1.69
SMC1BQ8NDV3 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
SMC1BQ8NDV3 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC25.61■■□□□ 1.69
SMC1BQ8NDV3 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
SMC1BQ8NDV3 ARMC10P1-201ENST00000313754 855 ntBASIC25.61■■□□□ 1.69
SMC1BQ8NDV3 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC25.61■■□□□ 1.69
SMC1BQ8NDV3 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC25.61■■□□□ 1.69
SMC1BQ8NDV3 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
SMC1BQ8NDV3 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC25.61■■□□□ 1.69
SMC1BQ8NDV3 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC25.61■■□□□ 1.69
SMC1BQ8NDV3 KRT17P3-201ENST00000420566 1262 ntBASIC25.61■■□□□ 1.69
SMC1BQ8NDV3 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC25.61■■□□□ 1.69
SMC1BQ8NDV3 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC25.61■■□□□ 1.69
SMC1BQ8NDV3 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC25.61■■□□□ 1.69
SMC1BQ8NDV3 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC25.61■■□□□ 1.69
SMC1BQ8NDV3 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC25.61■■□□□ 1.69
SMC1BQ8NDV3 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
SMC1BQ8NDV3 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SMC1BQ8NDV3 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SMC1BQ8NDV3 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC25.6■■□□□ 1.69
SMC1BQ8NDV3 OGG1-209ENST00000383826 1069 ntTSL 5 BASIC25.6■■□□□ 1.69
SMC1BQ8NDV3 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC25.6■■□□□ 1.69
SMC1BQ8NDV3 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC25.6■■□□□ 1.69
SMC1BQ8NDV3 PPOX-219ENST00000544598 813 ntTSL 2 BASIC25.6■■□□□ 1.69
SMC1BQ8NDV3 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC25.6■■□□□ 1.69
SMC1BQ8NDV3 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
SMC1BQ8NDV3 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
SMC1BQ8NDV3 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC25.59■■□□□ 1.69
SMC1BQ8NDV3 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
SMC1BQ8NDV3 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
SMC1BQ8NDV3 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
SMC1BQ8NDV3 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms