Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 AP004607.7-201ENST00000527152 1677 ntBASIC19.83■□□□□ 0.76
BEST3Q8N1M1 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC19.83■□□□□ 0.76
BEST3Q8N1M1 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
BEST3Q8N1M1 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
BEST3Q8N1M1 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
BEST3Q8N1M1 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
BEST3Q8N1M1 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
BEST3Q8N1M1 KRT87P-202ENST00000534226 1464 ntBASIC19.82■□□□□ 0.76
BEST3Q8N1M1 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC19.82■□□□□ 0.76
BEST3Q8N1M1 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.82■□□□□ 0.76
BEST3Q8N1M1 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
BEST3Q8N1M1 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
BEST3Q8N1M1 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
BEST3Q8N1M1 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC19.82■□□□□ 0.76
BEST3Q8N1M1 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC19.82■□□□□ 0.76
BEST3Q8N1M1 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.82■□□□□ 0.76
BEST3Q8N1M1 AC080038.1-201ENST00000611274 1154 ntBASIC19.82■□□□□ 0.76
BEST3Q8N1M1 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
BEST3Q8N1M1 PKD1P6-201ENST00000343738 4769 ntBASIC19.82■□□□□ 0.76
BEST3Q8N1M1 LINC00526-201ENST00000581067 1875 ntBASIC19.82■□□□□ 0.76
BEST3Q8N1M1 GCA-201ENST00000233612 1694 ntTSL 2 BASIC19.81■□□□□ 0.76
BEST3Q8N1M1 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
BEST3Q8N1M1 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
BEST3Q8N1M1 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
BEST3Q8N1M1 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
BEST3Q8N1M1 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
BEST3Q8N1M1 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
BEST3Q8N1M1 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
BEST3Q8N1M1 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.81■□□□□ 0.76
BEST3Q8N1M1 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
BEST3Q8N1M1 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
BEST3Q8N1M1 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
BEST3Q8N1M1 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
BEST3Q8N1M1 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC19.81■□□□□ 0.76
BEST3Q8N1M1 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
BEST3Q8N1M1 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
BEST3Q8N1M1 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
BEST3Q8N1M1 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
BEST3Q8N1M1 ME2-208ENST00000638937 2471 ntTSL 5 BASIC19.8■□□□□ 0.76
BEST3Q8N1M1 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
BEST3Q8N1M1 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
BEST3Q8N1M1 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.8■□□□□ 0.76
BEST3Q8N1M1 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
BEST3Q8N1M1 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
BEST3Q8N1M1 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.8■□□□□ 0.76
BEST3Q8N1M1 ESRRAP2-201ENST00000418437 1549 ntBASIC19.8■□□□□ 0.76
BEST3Q8N1M1 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
BEST3Q8N1M1 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
BEST3Q8N1M1 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC19.79■□□□□ 0.76
BEST3Q8N1M1 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.79■□□□□ 0.76
BEST3Q8N1M1 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.79■□□□□ 0.76
BEST3Q8N1M1 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
BEST3Q8N1M1 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
BEST3Q8N1M1 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
BEST3Q8N1M1 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
BEST3Q8N1M1 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
BEST3Q8N1M1 AC104187.1-201ENST00000607510 612 ntBASIC19.79■□□□□ 0.76
BEST3Q8N1M1 BID-214ENST00000617586 542 ntTSL 5 BASIC19.79■□□□□ 0.76
BEST3Q8N1M1 WWOX-218ENST00000627394 894 ntTSL 5 BASIC19.79■□□□□ 0.76
BEST3Q8N1M1 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
BEST3Q8N1M1 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
BEST3Q8N1M1 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.79■□□□□ 0.76
BEST3Q8N1M1 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.79■□□□□ 0.76
BEST3Q8N1M1 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
BEST3Q8N1M1 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
BEST3Q8N1M1 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
BEST3Q8N1M1 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
BEST3Q8N1M1 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
BEST3Q8N1M1 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC19.78■□□□□ 0.76
BEST3Q8N1M1 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC19.78■□□□□ 0.76
BEST3Q8N1M1 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC19.78■□□□□ 0.76
BEST3Q8N1M1 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC19.78■□□□□ 0.76
BEST3Q8N1M1 AC087742.1-201ENST00000575880 1738 ntBASIC19.78■□□□□ 0.76
BEST3Q8N1M1 AC055733.4-201ENST00000638462 1354 ntBASIC19.78■□□□□ 0.76
BEST3Q8N1M1 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
BEST3Q8N1M1 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
BEST3Q8N1M1 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
BEST3Q8N1M1 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC19.78■□□□□ 0.76
BEST3Q8N1M1 COMT-203ENST00000403184 2217 ntTSL 2 BASIC19.78■□□□□ 0.76
BEST3Q8N1M1 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
BEST3Q8N1M1 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
BEST3Q8N1M1 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.77■□□□□ 0.76
BEST3Q8N1M1 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.77■□□□□ 0.76
BEST3Q8N1M1 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
BEST3Q8N1M1 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
BEST3Q8N1M1 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
BEST3Q8N1M1 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.77■□□□□ 0.76
BEST3Q8N1M1 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC19.77■□□□□ 0.76
BEST3Q8N1M1 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC19.77■□□□□ 0.76
BEST3Q8N1M1 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.75
BEST3Q8N1M1 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
BEST3Q8N1M1 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
BEST3Q8N1M1 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
BEST3Q8N1M1 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
BEST3Q8N1M1 MFF-207ENST00000409565 1548 ntTSL 2 BASIC19.76■□□□□ 0.75
BEST3Q8N1M1 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BEST3Q8N1M1 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BEST3Q8N1M1 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BEST3Q8N1M1 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
BEST3Q8N1M1 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms