Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.36■□□□□ 0.85
UBE3DQ7Z6J8 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
UBE3DQ7Z6J8 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.36■□□□□ 0.85
UBE3DQ7Z6J8 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
UBE3DQ7Z6J8 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
UBE3DQ7Z6J8 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.36■□□□□ 0.85
UBE3DQ7Z6J8 MIR6084-201ENST00000622012 110 ntBASIC20.36■□□□□ 0.85
UBE3DQ7Z6J8 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
UBE3DQ7Z6J8 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
UBE3DQ7Z6J8 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
UBE3DQ7Z6J8 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.35■□□□□ 0.85
UBE3DQ7Z6J8 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
UBE3DQ7Z6J8 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
UBE3DQ7Z6J8 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
UBE3DQ7Z6J8 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.35■□□□□ 0.85
UBE3DQ7Z6J8 AL354811.1-201ENST00000610286 706 ntBASIC20.35■□□□□ 0.85
UBE3DQ7Z6J8 AP006587.3-201ENST00000525742 1516 ntBASIC20.35■□□□□ 0.85
UBE3DQ7Z6J8 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.35■□□□□ 0.85
UBE3DQ7Z6J8 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
UBE3DQ7Z6J8 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
UBE3DQ7Z6J8 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
UBE3DQ7Z6J8 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.35■□□□□ 0.85
UBE3DQ7Z6J8 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.35■□□□□ 0.85
UBE3DQ7Z6J8 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.34■□□□□ 0.85
UBE3DQ7Z6J8 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
UBE3DQ7Z6J8 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.34■□□□□ 0.85
UBE3DQ7Z6J8 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.34■□□□□ 0.85
UBE3DQ7Z6J8 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
UBE3DQ7Z6J8 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.34■□□□□ 0.85
UBE3DQ7Z6J8 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
UBE3DQ7Z6J8 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC20.34■□□□□ 0.85
UBE3DQ7Z6J8 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
UBE3DQ7Z6J8 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.34■□□□□ 0.85
UBE3DQ7Z6J8 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.34■□□□□ 0.85
UBE3DQ7Z6J8 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.34■□□□□ 0.85
UBE3DQ7Z6J8 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.34■□□□□ 0.85
UBE3DQ7Z6J8 AL358852.1-201ENST00000623174 1268 ntBASIC20.34■□□□□ 0.85
UBE3DQ7Z6J8 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
UBE3DQ7Z6J8 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.34■□□□□ 0.85
UBE3DQ7Z6J8 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
UBE3DQ7Z6J8 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.34■□□□□ 0.85
UBE3DQ7Z6J8 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
UBE3DQ7Z6J8 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
UBE3DQ7Z6J8 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
UBE3DQ7Z6J8 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
UBE3DQ7Z6J8 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
UBE3DQ7Z6J8 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
UBE3DQ7Z6J8 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
UBE3DQ7Z6J8 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
UBE3DQ7Z6J8 AC009237.3-201ENST00000393279 1427 ntBASIC20.33■□□□□ 0.84
UBE3DQ7Z6J8 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
UBE3DQ7Z6J8 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
UBE3DQ7Z6J8 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
UBE3DQ7Z6J8 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
UBE3DQ7Z6J8 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
UBE3DQ7Z6J8 AC055733.4-201ENST00000638462 1354 ntBASIC20.33■□□□□ 0.84
UBE3DQ7Z6J8 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
UBE3DQ7Z6J8 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
UBE3DQ7Z6J8 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
UBE3DQ7Z6J8 AC003102.1-202ENST00000563394 1796 ntBASIC20.32■□□□□ 0.84
UBE3DQ7Z6J8 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
UBE3DQ7Z6J8 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.32■□□□□ 0.84
UBE3DQ7Z6J8 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
UBE3DQ7Z6J8 TPRG1LP1-201ENST00000598702 760 ntBASIC20.32■□□□□ 0.84
UBE3DQ7Z6J8 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.32■□□□□ 0.84
UBE3DQ7Z6J8 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.32■□□□□ 0.84
UBE3DQ7Z6J8 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC20.32■□□□□ 0.84
UBE3DQ7Z6J8 AC005224.4-201ENST00000583262 1652 ntBASIC20.32■□□□□ 0.84
UBE3DQ7Z6J8 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
UBE3DQ7Z6J8 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.32■□□□□ 0.84
UBE3DQ7Z6J8 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC20.31■□□□□ 0.84
UBE3DQ7Z6J8 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
UBE3DQ7Z6J8 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC20.31■□□□□ 0.84
UBE3DQ7Z6J8 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
UBE3DQ7Z6J8 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
UBE3DQ7Z6J8 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.31■□□□□ 0.84
UBE3DQ7Z6J8 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
UBE3DQ7Z6J8 JTB-203ENST00000368589 1216 ntTSL 2 BASIC20.31■□□□□ 0.84
UBE3DQ7Z6J8 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.31■□□□□ 0.84
UBE3DQ7Z6J8 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
UBE3DQ7Z6J8 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.31■□□□□ 0.84
UBE3DQ7Z6J8 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
UBE3DQ7Z6J8 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.31■□□□□ 0.84
UBE3DQ7Z6J8 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
UBE3DQ7Z6J8 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.31■□□□□ 0.84
UBE3DQ7Z6J8 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
UBE3DQ7Z6J8 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
UBE3DQ7Z6J8 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
UBE3DQ7Z6J8 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
UBE3DQ7Z6J8 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
UBE3DQ7Z6J8 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
UBE3DQ7Z6J8 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.3■□□□□ 0.84
UBE3DQ7Z6J8 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.3■□□□□ 0.84
UBE3DQ7Z6J8 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
UBE3DQ7Z6J8 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.3■□□□□ 0.84
UBE3DQ7Z6J8 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.3■□□□□ 0.84
UBE3DQ7Z6J8 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
UBE3DQ7Z6J8 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
UBE3DQ7Z6J8 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
UBE3DQ7Z6J8 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.29■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms