Protein–RNA interactions for Protein: Q6UVK1

CSPG4, Chondroitin sulfate proteoglycan 4, humanhuman

Predictions only

Length 2,322 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4Q6UVK1 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CSPG4Q6UVK1 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC17.74■□□□□ 0.43
CSPG4Q6UVK1 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CSPG4Q6UVK1 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CSPG4Q6UVK1 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CSPG4Q6UVK1 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC17.74■□□□□ 0.43
CSPG4Q6UVK1 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CSPG4Q6UVK1 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CSPG4Q6UVK1 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CSPG4Q6UVK1 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CSPG4Q6UVK1 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC17.74■□□□□ 0.43
CSPG4Q6UVK1 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CSPG4Q6UVK1 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CSPG4Q6UVK1 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC17.73■□□□□ 0.43
CSPG4Q6UVK1 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC17.73■□□□□ 0.43
CSPG4Q6UVK1 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC17.73■□□□□ 0.43
CSPG4Q6UVK1 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC17.73■□□□□ 0.43
CSPG4Q6UVK1 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC17.73■□□□□ 0.43
CSPG4Q6UVK1 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CSPG4Q6UVK1 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC17.73■□□□□ 0.43
CSPG4Q6UVK1 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CSPG4Q6UVK1 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC17.73■□□□□ 0.43
CSPG4Q6UVK1 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
CSPG4Q6UVK1 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC17.73■□□□□ 0.43
CSPG4Q6UVK1 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC17.73■□□□□ 0.43
CSPG4Q6UVK1 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CSPG4Q6UVK1 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC17.73■□□□□ 0.43
CSPG4Q6UVK1 SERP1-208ENST00000491660 830 ntTSL 2 BASIC17.73■□□□□ 0.43
CSPG4Q6UVK1 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC17.73■□□□□ 0.43
CSPG4Q6UVK1 UNC93B5-201ENST00000530315 699 ntBASIC17.73■□□□□ 0.43
CSPG4Q6UVK1 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC17.73■□□□□ 0.43
CSPG4Q6UVK1 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC17.73■□□□□ 0.43
CSPG4Q6UVK1 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CSPG4Q6UVK1 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CSPG4Q6UVK1 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC17.73■□□□□ 0.43
CSPG4Q6UVK1 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CSPG4Q6UVK1 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CSPG4Q6UVK1 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
CSPG4Q6UVK1 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC17.72■□□□□ 0.43
CSPG4Q6UVK1 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC17.72■□□□□ 0.43
CSPG4Q6UVK1 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CSPG4Q6UVK1 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CSPG4Q6UVK1 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CSPG4Q6UVK1 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC17.72■□□□□ 0.43
CSPG4Q6UVK1 AC138907.5-202ENST00000569484 235 ntBASIC17.72■□□□□ 0.43
CSPG4Q6UVK1 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC17.72■□□□□ 0.43
CSPG4Q6UVK1 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
CSPG4Q6UVK1 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CSPG4Q6UVK1 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC17.71■□□□□ 0.43
CSPG4Q6UVK1 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
CSPG4Q6UVK1 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
CSPG4Q6UVK1 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CSPG4Q6UVK1 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
CSPG4Q6UVK1 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC17.71■□□□□ 0.43
CSPG4Q6UVK1 RARRES2P4-201ENST00000514074 484 ntBASIC17.71■□□□□ 0.43
CSPG4Q6UVK1 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC17.71■□□□□ 0.43
CSPG4Q6UVK1 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC17.71■□□□□ 0.43
CSPG4Q6UVK1 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CSPG4Q6UVK1 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC17.71■□□□□ 0.43
CSPG4Q6UVK1 AC008694.1-202ENST00000636953 945 ntBASIC17.71■□□□□ 0.43
CSPG4Q6UVK1 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.71■□□□□ 0.43
CSPG4Q6UVK1 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC17.71■□□□□ 0.43
CSPG4Q6UVK1 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC17.71■□□□□ 0.43
CSPG4Q6UVK1 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC17.71■□□□□ 0.43
CSPG4Q6UVK1 PHB2-213ENST00000546111 858 ntTSL 2 BASIC17.71■□□□□ 0.43
CSPG4Q6UVK1 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC17.71■□□□□ 0.43
CSPG4Q6UVK1 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CSPG4Q6UVK1 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CSPG4Q6UVK1 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC17.7■□□□□ 0.42
CSPG4Q6UVK1 LINC01301-204ENST00000530725 577 ntTSL 4 BASIC17.7■□□□□ 0.42
CSPG4Q6UVK1 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC17.7■□□□□ 0.42
CSPG4Q6UVK1 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CSPG4Q6UVK1 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CSPG4Q6UVK1 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
CSPG4Q6UVK1 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CSPG4Q6UVK1 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC17.7■□□□□ 0.42
CSPG4Q6UVK1 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC17.7■□□□□ 0.42
CSPG4Q6UVK1 CYP2T1P-201ENST00000432607 1285 ntBASIC17.7■□□□□ 0.42
CSPG4Q6UVK1 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC17.7■□□□□ 0.42
CSPG4Q6UVK1 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
CSPG4Q6UVK1 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CSPG4Q6UVK1 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
CSPG4Q6UVK1 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CSPG4Q6UVK1 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC17.69■□□□□ 0.42
CSPG4Q6UVK1 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
CSPG4Q6UVK1 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CSPG4Q6UVK1 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CSPG4Q6UVK1 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC17.69■□□□□ 0.42
CSPG4Q6UVK1 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC17.69■□□□□ 0.42
CSPG4Q6UVK1 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CSPG4Q6UVK1 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CSPG4Q6UVK1 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
CSPG4Q6UVK1 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CSPG4Q6UVK1 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
CSPG4Q6UVK1 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
CSPG4Q6UVK1 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
CSPG4Q6UVK1 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC17.69■□□□□ 0.42
CSPG4Q6UVK1 AL512625.2-201ENST00000417533 625 ntBASIC17.69■□□□□ 0.42
CSPG4Q6UVK1 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
CSPG4Q6UVK1 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC17.68■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms