Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC26.47■■□□□ 1.83
CCDC88AQ3V6T2 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
CCDC88AQ3V6T2 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
CCDC88AQ3V6T2 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC26.46■■□□□ 1.83
CCDC88AQ3V6T2 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CCDC88AQ3V6T2 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
CCDC88AQ3V6T2 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
CCDC88AQ3V6T2 AC007322.4-201ENST00000509611 723 ntBASIC26.46■■□□□ 1.83
CCDC88AQ3V6T2 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC26.46■■□□□ 1.83
CCDC88AQ3V6T2 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC26.46■■□□□ 1.83
CCDC88AQ3V6T2 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC26.46■■□□□ 1.83
CCDC88AQ3V6T2 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
CCDC88AQ3V6T2 USP36-216ENST00000589424 970 ntTSL 5 BASIC26.46■■□□□ 1.83
CCDC88AQ3V6T2 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC26.46■■□□□ 1.83
CCDC88AQ3V6T2 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC26.46■■□□□ 1.83
CCDC88AQ3V6T2 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC26.45■■□□□ 1.83
CCDC88AQ3V6T2 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC26.45■■□□□ 1.83
CCDC88AQ3V6T2 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.83
CCDC88AQ3V6T2 UNC93B4-201ENST00000505679 747 ntBASIC26.45■■□□□ 1.83
CCDC88AQ3V6T2 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC26.45■■□□□ 1.83
CCDC88AQ3V6T2 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC26.45■■□□□ 1.83
CCDC88AQ3V6T2 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC26.45■■□□□ 1.83
CCDC88AQ3V6T2 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.82
CCDC88AQ3V6T2 EML2-209ENST00000587152 2763 ntAPPRIS ALT2 TSL 2 BASIC26.45■■□□□ 1.82
CCDC88AQ3V6T2 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.82
CCDC88AQ3V6T2 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC26.45■■□□□ 1.82
CCDC88AQ3V6T2 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC26.45■■□□□ 1.82
CCDC88AQ3V6T2 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC26.45■■□□□ 1.82
CCDC88AQ3V6T2 AC093323.1-202ENST00000635031 2045 ntBASIC26.45■■□□□ 1.82
CCDC88AQ3V6T2 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC26.45■■□□□ 1.82
CCDC88AQ3V6T2 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC26.45■■□□□ 1.82
CCDC88AQ3V6T2 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
CCDC88AQ3V6T2 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
CCDC88AQ3V6T2 LINC01960-201ENST00000563759 1884 ntBASIC26.44■■□□□ 1.82
CCDC88AQ3V6T2 DUSP8P3-201ENST00000399571 1760 ntBASIC26.44■■□□□ 1.82
CCDC88AQ3V6T2 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC26.44■■□□□ 1.82
CCDC88AQ3V6T2 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC26.44■■□□□ 1.82
CCDC88AQ3V6T2 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC26.44■■□□□ 1.82
CCDC88AQ3V6T2 AC006058.3-201ENST00000606217 1069 ntBASIC26.44■■□□□ 1.82
CCDC88AQ3V6T2 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CCDC88AQ3V6T2 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC26.43■■□□□ 1.82
CCDC88AQ3V6T2 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC26.43■■□□□ 1.82
CCDC88AQ3V6T2 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
CCDC88AQ3V6T2 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC26.43■■□□□ 1.82
CCDC88AQ3V6T2 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC26.43■■□□□ 1.82
CCDC88AQ3V6T2 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC26.42■■□□□ 1.82
CCDC88AQ3V6T2 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC26.42■■□□□ 1.82
CCDC88AQ3V6T2 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC26.42■■□□□ 1.82
CCDC88AQ3V6T2 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CCDC88AQ3V6T2 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CCDC88AQ3V6T2 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC26.42■■□□□ 1.82
CCDC88AQ3V6T2 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
CCDC88AQ3V6T2 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC88AQ3V6T2 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC88AQ3V6T2 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC26.41■■□□□ 1.82
CCDC88AQ3V6T2 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC26.41■■□□□ 1.82
CCDC88AQ3V6T2 MMD2-204ENST00000612910 778 ntTSL 5 BASIC26.41■■□□□ 1.82
CCDC88AQ3V6T2 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC26.41■■□□□ 1.82
CCDC88AQ3V6T2 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC26.41■■□□□ 1.82
CCDC88AQ3V6T2 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC88AQ3V6T2 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC88AQ3V6T2 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC26.41■■□□□ 1.82
CCDC88AQ3V6T2 DUSP8P5-201ENST00000422884 1815 ntBASIC26.41■■□□□ 1.82
CCDC88AQ3V6T2 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC88AQ3V6T2 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC26.41■■□□□ 1.82
CCDC88AQ3V6T2 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC88AQ3V6T2 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
CCDC88AQ3V6T2 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC26.4■■□□□ 1.82
CCDC88AQ3V6T2 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC26.4■■□□□ 1.82
CCDC88AQ3V6T2 CASP6-205ENST00000505486 538 ntTSL 4 BASIC26.4■■□□□ 1.82
CCDC88AQ3V6T2 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC26.4■■□□□ 1.82
CCDC88AQ3V6T2 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
CCDC88AQ3V6T2 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC26.4■■□□□ 1.82
CCDC88AQ3V6T2 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC26.4■■□□□ 1.82
CCDC88AQ3V6T2 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CCDC88AQ3V6T2 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CCDC88AQ3V6T2 AC092118.2-201ENST00000613495 667 ntBASIC26.4■■□□□ 1.82
CCDC88AQ3V6T2 OR10C1-204ENST00000622521 1039 ntBASIC26.4■■□□□ 1.82
CCDC88AQ3V6T2 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC26.4■■□□□ 1.82
CCDC88AQ3V6T2 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
CCDC88AQ3V6T2 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
CCDC88AQ3V6T2 UNC93B5-201ENST00000530315 699 ntBASIC26.39■■□□□ 1.82
CCDC88AQ3V6T2 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC26.39■■□□□ 1.82
CCDC88AQ3V6T2 AC055733.4-201ENST00000638462 1354 ntBASIC26.39■■□□□ 1.81
CCDC88AQ3V6T2 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC26.39■■□□□ 1.81
CCDC88AQ3V6T2 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC26.39■■□□□ 1.81
CCDC88AQ3V6T2 OXCT2P1-201ENST00000447263 1535 ntBASIC26.39■■□□□ 1.81
CCDC88AQ3V6T2 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
CCDC88AQ3V6T2 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC26.38■■□□□ 1.81
CCDC88AQ3V6T2 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CCDC88AQ3V6T2 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC26.38■■□□□ 1.81
CCDC88AQ3V6T2 PLLP-204ENST00000569059 665 ntTSL 3 BASIC26.38■■□□□ 1.81
CCDC88AQ3V6T2 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CCDC88AQ3V6T2 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CCDC88AQ3V6T2 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
CCDC88AQ3V6T2 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
CCDC88AQ3V6T2 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC26.38■■□□□ 1.81
CCDC88AQ3V6T2 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC26.38■■□□□ 1.81
CCDC88AQ3V6T2 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC26.38■■□□□ 1.81
CCDC88AQ3V6T2 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC26.38■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms