Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
CCDC144BQ3MJ40 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC24.87■■□□□ 1.57
CCDC144BQ3MJ40 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC24.87■■□□□ 1.57
CCDC144BQ3MJ40 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
CCDC144BQ3MJ40 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC24.87■■□□□ 1.57
CCDC144BQ3MJ40 AC080038.1-201ENST00000611274 1154 ntBASIC24.87■■□□□ 1.57
CCDC144BQ3MJ40 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
CCDC144BQ3MJ40 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC24.87■■□□□ 1.57
CCDC144BQ3MJ40 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
CCDC144BQ3MJ40 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC24.87■■□□□ 1.57
CCDC144BQ3MJ40 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
CCDC144BQ3MJ40 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC24.86■■□□□ 1.57
CCDC144BQ3MJ40 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
CCDC144BQ3MJ40 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC24.86■■□□□ 1.57
CCDC144BQ3MJ40 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC24.86■■□□□ 1.57
CCDC144BQ3MJ40 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC24.86■■□□□ 1.57
CCDC144BQ3MJ40 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
CCDC144BQ3MJ40 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC24.86■■□□□ 1.57
CCDC144BQ3MJ40 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC24.86■■□□□ 1.57
CCDC144BQ3MJ40 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC24.86■■□□□ 1.57
CCDC144BQ3MJ40 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC24.86■■□□□ 1.57
CCDC144BQ3MJ40 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC144BQ3MJ40 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC24.85■■□□□ 1.57
CCDC144BQ3MJ40 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC144BQ3MJ40 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC144BQ3MJ40 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC144BQ3MJ40 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC144BQ3MJ40 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC144BQ3MJ40 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC24.85■■□□□ 1.57
CCDC144BQ3MJ40 DENND3-207ENST00000518347 850 ntTSL 2 BASIC24.85■■□□□ 1.57
CCDC144BQ3MJ40 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC24.85■■□□□ 1.57
CCDC144BQ3MJ40 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC24.85■■□□□ 1.57
CCDC144BQ3MJ40 AC137761.2-201ENST00000561729 223 ntBASIC24.85■■□□□ 1.57
CCDC144BQ3MJ40 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC24.85■■□□□ 1.57
CCDC144BQ3MJ40 AC145350.3-201ENST00000569033 163 ntBASIC24.85■■□□□ 1.57
CCDC144BQ3MJ40 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC144BQ3MJ40 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
CCDC144BQ3MJ40 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC24.85■■□□□ 1.57
CCDC144BQ3MJ40 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC24.84■■□□□ 1.57
CCDC144BQ3MJ40 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC24.84■■□□□ 1.57
CCDC144BQ3MJ40 COX20-201ENST00000366528 568 ntTSL 2 BASIC24.84■■□□□ 1.57
CCDC144BQ3MJ40 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC24.84■■□□□ 1.57
CCDC144BQ3MJ40 AC016769.1-201ENST00000409132 1010 ntBASIC24.84■■□□□ 1.57
CCDC144BQ3MJ40 HLA-L-209ENST00000420110 1011 ntBASIC24.84■■□□□ 1.57
CCDC144BQ3MJ40 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC24.84■■□□□ 1.57
CCDC144BQ3MJ40 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC24.84■■□□□ 1.57
CCDC144BQ3MJ40 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
CCDC144BQ3MJ40 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC24.84■■□□□ 1.57
CCDC144BQ3MJ40 EI24-211ENST00000534546 1544 ntTSL 2 BASIC24.84■■□□□ 1.57
CCDC144BQ3MJ40 BX005040.4-201ENST00000637145 1518 ntBASIC24.84■■□□□ 1.57
CCDC144BQ3MJ40 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC24.84■■□□□ 1.57
CCDC144BQ3MJ40 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC24.84■■□□□ 1.57
CCDC144BQ3MJ40 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
CCDC144BQ3MJ40 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC24.83■■□□□ 1.57
CCDC144BQ3MJ40 AP004607.4-201ENST00000530158 1459 ntBASIC24.83■■□□□ 1.57
CCDC144BQ3MJ40 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
CCDC144BQ3MJ40 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC24.83■■□□□ 1.57
CCDC144BQ3MJ40 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC24.83■■□□□ 1.57
CCDC144BQ3MJ40 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
CCDC144BQ3MJ40 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
CCDC144BQ3MJ40 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
CCDC144BQ3MJ40 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
CCDC144BQ3MJ40 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC24.83■■□□□ 1.57
CCDC144BQ3MJ40 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC24.83■■□□□ 1.56
CCDC144BQ3MJ40 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.56
CCDC144BQ3MJ40 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC24.83■■□□□ 1.56
CCDC144BQ3MJ40 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC144BQ3MJ40 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC144BQ3MJ40 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC24.82■■□□□ 1.56
CCDC144BQ3MJ40 STX7-201ENST00000367937 1090 ntTSL 5 BASIC24.82■■□□□ 1.56
CCDC144BQ3MJ40 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC144BQ3MJ40 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC144BQ3MJ40 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC24.82■■□□□ 1.56
CCDC144BQ3MJ40 AC004854.2-201ENST00000608450 1441 ntBASIC24.82■■□□□ 1.56
CCDC144BQ3MJ40 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC24.82■■□□□ 1.56
CCDC144BQ3MJ40 AC068587.7-201ENST00000641602 218 ntBASIC24.82■■□□□ 1.56
CCDC144BQ3MJ40 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC144BQ3MJ40 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC24.82■■□□□ 1.56
CCDC144BQ3MJ40 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC24.82■■□□□ 1.56
CCDC144BQ3MJ40 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
CCDC144BQ3MJ40 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC144BQ3MJ40 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC24.81■■□□□ 1.56
CCDC144BQ3MJ40 DBI-210ENST00000542275 757 ntTSL 5 BASIC24.81■■□□□ 1.56
CCDC144BQ3MJ40 TK2-208ENST00000545043 1120 ntTSL 2 BASIC24.81■■□□□ 1.56
CCDC144BQ3MJ40 RAP2CP1-201ENST00000605103 478 ntBASIC24.81■■□□□ 1.56
CCDC144BQ3MJ40 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC24.81■■□□□ 1.56
CCDC144BQ3MJ40 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC144BQ3MJ40 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC144BQ3MJ40 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC144BQ3MJ40 CDCA4P2-201ENST00000441182 718 ntBASIC24.8■■□□□ 1.56
CCDC144BQ3MJ40 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC24.8■■□□□ 1.56
CCDC144BQ3MJ40 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC144BQ3MJ40 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC24.8■■□□□ 1.56
CCDC144BQ3MJ40 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC24.8■■□□□ 1.56
CCDC144BQ3MJ40 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC144BQ3MJ40 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC24.79■■□□□ 1.56
CCDC144BQ3MJ40 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC24.79■■□□□ 1.56
CCDC144BQ3MJ40 AL353803.4-201ENST00000565882 1934 ntBASIC24.79■■□□□ 1.56
CCDC144BQ3MJ40 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC24.79■■□□□ 1.56
CCDC144BQ3MJ40 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 42.2 ms