Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
NEK3P51956 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC22.03■■□□□ 1.12
NEK3P51956 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC22.03■■□□□ 1.12
NEK3P51956 AC105233.4-201ENST00000642045 216 ntBASIC22.03■■□□□ 1.12
NEK3P51956 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
NEK3P51956 SLC25A24-204ENST00000569674 2357 ntBASIC22.03■■□□□ 1.12
NEK3P51956 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
NEK3P51956 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
NEK3P51956 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
NEK3P51956 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC22.02■■□□□ 1.12
NEK3P51956 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC22.02■■□□□ 1.12
NEK3P51956 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC22.02■■□□□ 1.12
NEK3P51956 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC22.02■■□□□ 1.12
NEK3P51956 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
NEK3P51956 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC22.02■■□□□ 1.12
NEK3P51956 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
NEK3P51956 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
NEK3P51956 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC22.02■■□□□ 1.12
NEK3P51956 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
NEK3P51956 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC22.02■■□□□ 1.12
NEK3P51956 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
NEK3P51956 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC22.02■■□□□ 1.12
NEK3P51956 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC22.02■■□□□ 1.12
NEK3P51956 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
NEK3P51956 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
NEK3P51956 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
NEK3P51956 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
NEK3P51956 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
NEK3P51956 AC010141.3-201ENST00000456659 717 ntBASIC22.01■■□□□ 1.11
NEK3P51956 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC22.01■■□□□ 1.11
NEK3P51956 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC22.01■■□□□ 1.11
NEK3P51956 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
NEK3P51956 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC22.01■■□□□ 1.11
NEK3P51956 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
NEK3P51956 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC22.01■■□□□ 1.11
NEK3P51956 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC22.01■■□□□ 1.11
NEK3P51956 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
NEK3P51956 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC22■■□□□ 1.11
NEK3P51956 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
NEK3P51956 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC22■■□□□ 1.11
NEK3P51956 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
NEK3P51956 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC22■■□□□ 1.11
NEK3P51956 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC22■■□□□ 1.11
NEK3P51956 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
NEK3P51956 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC22■■□□□ 1.11
NEK3P51956 AC123595.1-201ENST00000440769 1046 ntBASIC22■■□□□ 1.11
NEK3P51956 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC22■■□□□ 1.11
NEK3P51956 MPST-204ENST00000404393 1329 ntTSL 5 BASIC22■■□□□ 1.11
NEK3P51956 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
NEK3P51956 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC22■■□□□ 1.11
NEK3P51956 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.99■■□□□ 1.11
NEK3P51956 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
NEK3P51956 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NEK3P51956 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NEK3P51956 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NEK3P51956 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
NEK3P51956 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC21.99■■□□□ 1.11
NEK3P51956 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.99■■□□□ 1.11
NEK3P51956 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC21.99■■□□□ 1.11
NEK3P51956 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.99■■□□□ 1.11
NEK3P51956 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.99■■□□□ 1.11
NEK3P51956 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NEK3P51956 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.99■■□□□ 1.11
NEK3P51956 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.99■■□□□ 1.11
NEK3P51956 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC21.99■■□□□ 1.11
NEK3P51956 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
NEK3P51956 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
NEK3P51956 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC21.98■■□□□ 1.11
NEK3P51956 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC21.98■■□□□ 1.11
NEK3P51956 AC026310.3-201ENST00000625186 2373 ntBASIC21.98■■□□□ 1.11
NEK3P51956 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
NEK3P51956 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
NEK3P51956 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.98■■□□□ 1.11
NEK3P51956 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.98■■□□□ 1.11
NEK3P51956 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
NEK3P51956 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
NEK3P51956 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC21.98■■□□□ 1.11
NEK3P51956 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
NEK3P51956 RAB43-208ENST00000615093 783 ntTSL 5 BASIC21.98■■□□□ 1.11
NEK3P51956 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.98■■□□□ 1.11
NEK3P51956 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.98■■□□□ 1.11
NEK3P51956 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
NEK3P51956 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.97■■□□□ 1.11
NEK3P51956 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.97■■□□□ 1.11
NEK3P51956 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
NEK3P51956 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NEK3P51956 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
NEK3P51956 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.97■■□□□ 1.11
NEK3P51956 AC034268.1-201ENST00000441047 882 ntBASIC21.97■■□□□ 1.11
NEK3P51956 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
NEK3P51956 AL162430.1-201ENST00000480705 870 ntBASIC21.97■■□□□ 1.11
NEK3P51956 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC21.97■■□□□ 1.11
NEK3P51956 AC104564.3-201ENST00000582367 638 ntBASIC21.97■■□□□ 1.11
NEK3P51956 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.97■■□□□ 1.11
NEK3P51956 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
NEK3P51956 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC21.97■■□□□ 1.11
NEK3P51956 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NEK3P51956 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
NEK3P51956 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
NEK3P51956 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms