Protein–RNA interactions for Protein: P43246

MSH2, DNA mismatch repair protein Msh2, humanhuman

Predictions only

Length 934 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2P43246 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
MSH2P43246 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.7■■□□□ 1.06
MSH2P43246 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC21.7■■□□□ 1.06
MSH2P43246 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
MSH2P43246 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
MSH2P43246 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH2P43246 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH2P43246 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MSH2P43246 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH2P43246 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MSH2P43246 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH2P43246 AF106564.1-201ENST00000607058 2553 ntBASIC21.69■■□□□ 1.06
MSH2P43246 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.69■■□□□ 1.06
MSH2P43246 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.69■■□□□ 1.06
MSH2P43246 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC21.69■■□□□ 1.06
MSH2P43246 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC21.69■■□□□ 1.06
MSH2P43246 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH2P43246 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
MSH2P43246 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC21.69■■□□□ 1.06
MSH2P43246 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.69■■□□□ 1.06
MSH2P43246 AC079089.2-201ENST00000531211 1277 ntBASIC21.69■■□□□ 1.06
MSH2P43246 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.69■■□□□ 1.06
MSH2P43246 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
MSH2P43246 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.69■■□□□ 1.06
MSH2P43246 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
MSH2P43246 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
MSH2P43246 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH2P43246 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
MSH2P43246 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH2P43246 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH2P43246 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
MSH2P43246 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH2P43246 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
MSH2P43246 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC21.68■■□□□ 1.06
MSH2P43246 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
MSH2P43246 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.68■■□□□ 1.06
MSH2P43246 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
MSH2P43246 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
MSH2P43246 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
MSH2P43246 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
MSH2P43246 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH2P43246 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.67■■□□□ 1.06
MSH2P43246 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MSH2P43246 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH2P43246 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
MSH2P43246 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
MSH2P43246 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC21.67■■□□□ 1.06
MSH2P43246 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
MSH2P43246 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.67■■□□□ 1.06
MSH2P43246 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.66■■□□□ 1.06
MSH2P43246 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
MSH2P43246 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH2P43246 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH2P43246 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH2P43246 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC21.66■■□□□ 1.06
MSH2P43246 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC21.66■■□□□ 1.06
MSH2P43246 AL031602.1-201ENST00000633169 911 ntBASIC21.66■■□□□ 1.06
MSH2P43246 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
MSH2P43246 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH2P43246 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
MSH2P43246 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC21.66■■□□□ 1.06
MSH2P43246 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
MSH2P43246 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
MSH2P43246 ZMAT3-203ENST00000432729 2944 ntAPPRIS ALT1 TSL 2 BASIC21.66■■□□□ 1.06
MSH2P43246 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
MSH2P43246 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH2P43246 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH2P43246 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH2P43246 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
MSH2P43246 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
MSH2P43246 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH2P43246 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.65■■□□□ 1.06
MSH2P43246 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH2P43246 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
MSH2P43246 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
MSH2P43246 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.65■■□□□ 1.06
MSH2P43246 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
MSH2P43246 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.06
MSH2P43246 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.06
MSH2P43246 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC21.64■■□□□ 1.06
MSH2P43246 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC21.64■■□□□ 1.06
MSH2P43246 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.06
MSH2P43246 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC21.64■■□□□ 1.05
MSH2P43246 LSM4-201ENST00000252816 986 ntTSL 2 BASIC21.64■■□□□ 1.05
MSH2P43246 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MSH2P43246 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC21.64■■□□□ 1.05
MSH2P43246 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MSH2P43246 OR2A1-AS1-204ENST00000470435 602 ntBASIC21.64■■□□□ 1.05
MSH2P43246 CREM-229ENST00000474362 1030 ntTSL 2 BASIC21.64■■□□□ 1.05
MSH2P43246 AC104564.3-201ENST00000582367 638 ntBASIC21.64■■□□□ 1.05
MSH2P43246 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.64■■□□□ 1.05
MSH2P43246 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MSH2P43246 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
MSH2P43246 AC026471.6-201ENST00000622954 1905 ntBASIC21.64■■□□□ 1.05
MSH2P43246 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MSH2P43246 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.64■■□□□ 1.05
MSH2P43246 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
MSH2P43246 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
MSH2P43246 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
MSH2P43246 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.64■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms