Protein–RNA interactions for Protein: P29350

PTPN6, Tyrosine-protein phosphatase non-receptor type 6, humanhuman

Predictions only

Length 595 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN6P29350 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC20.32■□□□□ 0.84
PTPN6P29350 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTPN6P29350 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
PTPN6P29350 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
PTPN6P29350 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN6P29350 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN6P29350 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.31■□□□□ 0.84
PTPN6P29350 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC20.31■□□□□ 0.84
PTPN6P29350 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN6P29350 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC20.31■□□□□ 0.84
PTPN6P29350 EDA-201ENST00000338901 1233 ntBASIC20.31■□□□□ 0.84
PTPN6P29350 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.31■□□□□ 0.84
PTPN6P29350 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.31■□□□□ 0.84
PTPN6P29350 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC20.31■□□□□ 0.84
PTPN6P29350 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.31■□□□□ 0.84
PTPN6P29350 MIR4767-201ENST00000582827 78 ntBASIC20.31■□□□□ 0.84
PTPN6P29350 AL031432.3-201ENST00000607698 485 ntBASIC20.31■□□□□ 0.84
PTPN6P29350 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN6P29350 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN6P29350 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN6P29350 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
PTPN6P29350 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN6P29350 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
PTPN6P29350 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN6P29350 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN6P29350 AF106564.1-201ENST00000607058 2553 ntBASIC20.3■□□□□ 0.84
PTPN6P29350 OR2I1P-207ENST00000453522 948 ntBASIC20.3■□□□□ 0.84
PTPN6P29350 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.3■□□□□ 0.84
PTPN6P29350 AC136469.2-201ENST00000623944 1028 ntBASIC20.3■□□□□ 0.84
PTPN6P29350 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN6P29350 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN6P29350 TRIB3-201ENST00000217233 2499 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN6P29350 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.3■□□□□ 0.84
PTPN6P29350 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.3■□□□□ 0.84
PTPN6P29350 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
PTPN6P29350 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTPN6P29350 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTPN6P29350 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.29■□□□□ 0.84
PTPN6P29350 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
PTPN6P29350 OR7E47P-201ENST00000546390 1422 ntBASIC20.29■□□□□ 0.84
PTPN6P29350 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTPN6P29350 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PTPN6P29350 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.29■□□□□ 0.84
PTPN6P29350 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.29■□□□□ 0.84
PTPN6P29350 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PTPN6P29350 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
PTPN6P29350 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
PTPN6P29350 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.29■□□□□ 0.84
PTPN6P29350 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.28■□□□□ 0.84
PTPN6P29350 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN6P29350 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN6P29350 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN6P29350 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN6P29350 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN6P29350 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN6P29350 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.28■□□□□ 0.84
PTPN6P29350 AL355001.2-201ENST00000620617 1191 ntBASIC20.28■□□□□ 0.84
PTPN6P29350 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC20.28■□□□□ 0.84
PTPN6P29350 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN6P29350 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.28■□□□□ 0.84
PTPN6P29350 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
PTPN6P29350 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.28■□□□□ 0.84
PTPN6P29350 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
PTPN6P29350 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PTPN6P29350 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
PTPN6P29350 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.27■□□□□ 0.84
PTPN6P29350 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.27■□□□□ 0.84
PTPN6P29350 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PTPN6P29350 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PTPN6P29350 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.27■□□□□ 0.84
PTPN6P29350 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC20.27■□□□□ 0.84
PTPN6P29350 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.27■□□□□ 0.84
PTPN6P29350 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC20.27■□□□□ 0.84
PTPN6P29350 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC20.27■□□□□ 0.84
PTPN6P29350 SUDS3P1-201ENST00000505831 966 ntBASIC20.27■□□□□ 0.84
PTPN6P29350 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.27■□□□□ 0.84
PTPN6P29350 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC20.27■□□□□ 0.84
PTPN6P29350 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.27■□□□□ 0.84
PTPN6P29350 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.84
PTPN6P29350 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
PTPN6P29350 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
PTPN6P29350 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
PTPN6P29350 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
PTPN6P29350 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC20.27■□□□□ 0.83
PTPN6P29350 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.26■□□□□ 0.83
PTPN6P29350 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
PTPN6P29350 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTPN6P29350 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PTPN6P29350 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PTPN6P29350 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
PTPN6P29350 RBM38-205ENST00000440234 686 ntTSL 2 BASIC20.26■□□□□ 0.83
PTPN6P29350 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PTPN6P29350 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.26■□□□□ 0.83
PTPN6P29350 AC068587.7-201ENST00000641602 218 ntBASIC20.26■□□□□ 0.83
PTPN6P29350 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.26■□□□□ 0.83
PTPN6P29350 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
PTPN6P29350 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
PTPN6P29350 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC20.26■□□□□ 0.83
PTPN6P29350 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
PTPN6P29350 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 69 ms