Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
NPHP4O75161 AC211429.1-201ENST00000415277 523 ntBASIC30.64■■■□□ 2.49
NPHP4O75161 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC30.64■■■□□ 2.49
NPHP4O75161 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC30.64■■■□□ 2.49
NPHP4O75161 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC30.64■■■□□ 2.49
NPHP4O75161 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC30.64■■■□□ 2.49
NPHP4O75161 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC30.63■■■□□ 2.49
NPHP4O75161 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC30.63■■■□□ 2.49
NPHP4O75161 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC30.63■■■□□ 2.49
NPHP4O75161 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC30.63■■■□□ 2.49
NPHP4O75161 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
NPHP4O75161 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC30.62■■■□□ 2.49
NPHP4O75161 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
NPHP4O75161 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC30.62■■■□□ 2.49
NPHP4O75161 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC30.62■■■□□ 2.49
NPHP4O75161 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC30.62■■■□□ 2.49
NPHP4O75161 AL162412.1-201ENST00000567129 965 ntBASIC30.62■■■□□ 2.49
NPHP4O75161 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC30.62■■■□□ 2.49
NPHP4O75161 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
NPHP4O75161 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC30.61■■■□□ 2.49
NPHP4O75161 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC30.61■■■□□ 2.49
NPHP4O75161 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
NPHP4O75161 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
NPHP4O75161 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
NPHP4O75161 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC30.61■■■□□ 2.49
NPHP4O75161 SERPINH1P1-201ENST00000419794 1249 ntBASIC30.61■■■□□ 2.49
NPHP4O75161 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
NPHP4O75161 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC30.61■■■□□ 2.49
NPHP4O75161 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC30.61■■■□□ 2.49
NPHP4O75161 AC053503.5-201ENST00000601508 636 ntBASIC30.61■■■□□ 2.49
NPHP4O75161 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC30.61■■■□□ 2.49
NPHP4O75161 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC30.61■■■□□ 2.49
NPHP4O75161 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC30.6■■■□□ 2.49
NPHP4O75161 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
NPHP4O75161 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC30.6■■■□□ 2.49
NPHP4O75161 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC30.6■■■□□ 2.49
NPHP4O75161 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC30.6■■■□□ 2.49
NPHP4O75161 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC30.6■■■□□ 2.49
NPHP4O75161 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC30.6■■■□□ 2.49
NPHP4O75161 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC30.6■■■□□ 2.49
NPHP4O75161 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC30.6■■■□□ 2.49
NPHP4O75161 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC30.6■■■□□ 2.49
NPHP4O75161 LRRC34-206ENST00000522526 1899 ntAPPRIS P3 TSL 1 (best) BASIC30.6■■■□□ 2.49
NPHP4O75161 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
NPHP4O75161 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
NPHP4O75161 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC30.59■■■□□ 2.49
NPHP4O75161 IFI27L2-201ENST00000238609 511 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
NPHP4O75161 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC30.59■■■□□ 2.49
NPHP4O75161 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC30.59■■■□□ 2.49
NPHP4O75161 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
NPHP4O75161 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC30.59■■■□□ 2.49
NPHP4O75161 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC30.59■■■□□ 2.49
NPHP4O75161 LINC01023-201ENST00000606054 436 ntBASIC30.59■■■□□ 2.49
NPHP4O75161 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC30.59■■■□□ 2.49
NPHP4O75161 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC30.59■■■□□ 2.49
NPHP4O75161 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC30.58■■■□□ 2.49
NPHP4O75161 MRAP-201ENST00000303645 935 ntAPPRIS P4 TSL 1 (best) BASIC30.58■■■□□ 2.49
NPHP4O75161 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
NPHP4O75161 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC30.58■■■□□ 2.49
NPHP4O75161 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
NPHP4O75161 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
NPHP4O75161 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
NPHP4O75161 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
NPHP4O75161 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
NPHP4O75161 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC30.57■■■□□ 2.48
NPHP4O75161 SNORA78-201ENST00000459373 127 ntBASIC30.57■■■□□ 2.48
NPHP4O75161 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC30.57■■■□□ 2.48
NPHP4O75161 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC30.57■■■□□ 2.48
NPHP4O75161 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
NPHP4O75161 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC30.57■■■□□ 2.48
NPHP4O75161 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
NPHP4O75161 RPS20-210ENST00000523936 899 ntTSL 2 BASIC30.56■■■□□ 2.48
NPHP4O75161 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC30.56■■■□□ 2.48
NPHP4O75161 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC30.56■■■□□ 2.48
NPHP4O75161 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC30.56■■■□□ 2.48
NPHP4O75161 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC30.56■■■□□ 2.48
NPHP4O75161 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
NPHP4O75161 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC30.56■■■□□ 2.48
NPHP4O75161 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC30.56■■■□□ 2.48
NPHP4O75161 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC30.56■■■□□ 2.48
NPHP4O75161 RPPH1-201ENST00000516869 333 ntBASIC30.56■■■□□ 2.48
NPHP4O75161 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC30.56■■■□□ 2.48
NPHP4O75161 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC30.55■■■□□ 2.48
NPHP4O75161 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC30.55■■■□□ 2.48
NPHP4O75161 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC30.55■■■□□ 2.48
NPHP4O75161 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
NPHP4O75161 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC30.55■■■□□ 2.48
NPHP4O75161 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC30.55■■■□□ 2.48
NPHP4O75161 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC30.55■■■□□ 2.48
NPHP4O75161 CYP4V2-201ENST00000378802 2042 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
NPHP4O75161 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC30.55■■■□□ 2.48
NPHP4O75161 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC30.54■■■□□ 2.48
NPHP4O75161 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC30.54■■■□□ 2.48
NPHP4O75161 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC30.54■■■□□ 2.48
NPHP4O75161 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC30.54■■■□□ 2.48
NPHP4O75161 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
NPHP4O75161 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC30.54■■■□□ 2.48
NPHP4O75161 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
NPHP4O75161 GATS-209ENST00000454084 1030 ntTSL 3 BASIC30.54■■■□□ 2.48
NPHP4O75161 Z99916.2-201ENST00000604037 246 ntBASIC30.54■■■□□ 2.48
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms