Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.51■■□□□ 1.03
SHOX2O60902 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.51■■□□□ 1.03
SHOX2O60902 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SHOX2O60902 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.51■■□□□ 1.03
SHOX2O60902 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SHOX2O60902 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
SHOX2O60902 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
SHOX2O60902 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
SHOX2O60902 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SHOX2O60902 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
SHOX2O60902 EML3-217ENST00000531557 2509 ntTSL 5 BASIC21.51■■□□□ 1.03
SHOX2O60902 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHOX2O60902 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC21.5■■□□□ 1.03
SHOX2O60902 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC21.5■■□□□ 1.03
SHOX2O60902 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SHOX2O60902 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SHOX2O60902 C17orf82-201ENST00000623772 1530 ntBASIC21.5■■□□□ 1.03
SHOX2O60902 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC21.5■■□□□ 1.03
SHOX2O60902 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
SHOX2O60902 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHOX2O60902 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHOX2O60902 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHOX2O60902 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHOX2O60902 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHOX2O60902 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHOX2O60902 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SHOX2O60902 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.5■■□□□ 1.03
SHOX2O60902 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHOX2O60902 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHOX2O60902 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.5■■□□□ 1.03
SHOX2O60902 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHOX2O60902 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SHOX2O60902 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.5■■□□□ 1.03
SHOX2O60902 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHOX2O60902 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC21.49■■□□□ 1.03
SHOX2O60902 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHOX2O60902 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHOX2O60902 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC21.49■■□□□ 1.03
SHOX2O60902 MBP-237ENST00000579129 1052 ntTSL 5 BASIC21.49■■□□□ 1.03
SHOX2O60902 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHOX2O60902 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHOX2O60902 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC21.49■■□□□ 1.03
SHOX2O60902 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHOX2O60902 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
SHOX2O60902 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHOX2O60902 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHOX2O60902 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHOX2O60902 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC21.48■■□□□ 1.03
SHOX2O60902 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHOX2O60902 LINC01529-204ENST00000636474 1715 ntBASIC21.48■■□□□ 1.03
SHOX2O60902 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHOX2O60902 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHOX2O60902 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC21.48■■□□□ 1.03
SHOX2O60902 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHOX2O60902 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC21.48■■□□□ 1.03
SHOX2O60902 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.47■■□□□ 1.03
SHOX2O60902 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHOX2O60902 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SHOX2O60902 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC21.47■■□□□ 1.03
SHOX2O60902 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC21.47■■□□□ 1.03
SHOX2O60902 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
SHOX2O60902 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHOX2O60902 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC21.47■■□□□ 1.03
SHOX2O60902 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHOX2O60902 MIR4449-201ENST00000578365 66 ntBASIC21.47■■□□□ 1.03
SHOX2O60902 AC104564.3-201ENST00000582367 638 ntBASIC21.47■■□□□ 1.03
SHOX2O60902 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
SHOX2O60902 AC009831.1-201ENST00000580420 1582 ntBASIC21.47■■□□□ 1.03
SHOX2O60902 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC21.47■■□□□ 1.03
SHOX2O60902 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHOX2O60902 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHOX2O60902 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHOX2O60902 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHOX2O60902 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SHOX2O60902 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHOX2O60902 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.46■■□□□ 1.03
SHOX2O60902 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHOX2O60902 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHOX2O60902 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHOX2O60902 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SHOX2O60902 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21.46■■□□□ 1.03
SHOX2O60902 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHOX2O60902 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHOX2O60902 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC21.46■■□□□ 1.03
SHOX2O60902 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC21.46■■□□□ 1.03
SHOX2O60902 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHOX2O60902 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.45■■□□□ 1.03
SHOX2O60902 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.45■■□□□ 1.03
SHOX2O60902 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SHOX2O60902 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC21.45■■□□□ 1.02
SHOX2O60902 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
SHOX2O60902 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
SHOX2O60902 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SHOX2O60902 HES4-202ENST00000428771 1040 ntTSL 2 BASIC21.45■■□□□ 1.02
SHOX2O60902 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
SHOX2O60902 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
SHOX2O60902 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SHOX2O60902 AC098818.2-201ENST00000564925 2320 ntBASIC21.45■■□□□ 1.02
SHOX2O60902 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SHOX2O60902 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms