Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.9■■□□□ 1.1
CBX4O00257 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CBX4O00257 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
CBX4O00257 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC21.9■■□□□ 1.1
CBX4O00257 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC21.9■■□□□ 1.1
CBX4O00257 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.9■■□□□ 1.1
CBX4O00257 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.89■■□□□ 1.1
CBX4O00257 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
CBX4O00257 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
CBX4O00257 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.89■■□□□ 1.1
CBX4O00257 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
CBX4O00257 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.89■■□□□ 1.1
CBX4O00257 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
CBX4O00257 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.89■■□□□ 1.1
CBX4O00257 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
CBX4O00257 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.89■■□□□ 1.09
CBX4O00257 AC079140.4-201ENST00000507448 529 ntBASIC21.89■■□□□ 1.09
CBX4O00257 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.89■■□□□ 1.09
CBX4O00257 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.89■■□□□ 1.09
CBX4O00257 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.89■■□□□ 1.09
CBX4O00257 PDCD5-204ENST00000586035 601 ntTSL 3 BASIC21.89■■□□□ 1.09
CBX4O00257 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
CBX4O00257 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.89■■□□□ 1.09
CBX4O00257 AC242852.2-201ENST00000615738 1807 ntBASIC21.89■■□□□ 1.09
CBX4O00257 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
CBX4O00257 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
CBX4O00257 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.89■■□□□ 1.09
CBX4O00257 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CBX4O00257 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
CBX4O00257 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
CBX4O00257 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CBX4O00257 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.88■■□□□ 1.09
CBX4O00257 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CBX4O00257 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.88■■□□□ 1.09
CBX4O00257 AC004911.1-201ENST00000416316 871 ntBASIC21.88■■□□□ 1.09
CBX4O00257 NTF6G-201ENST00000591094 616 ntBASIC21.88■■□□□ 1.09
CBX4O00257 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.88■■□□□ 1.09
CBX4O00257 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
CBX4O00257 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CBX4O00257 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
CBX4O00257 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.88■■□□□ 1.09
CBX4O00257 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC21.88■■□□□ 1.09
CBX4O00257 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.88■■□□□ 1.09
CBX4O00257 AC055733.4-201ENST00000638462 1354 ntBASIC21.87■■□□□ 1.09
CBX4O00257 AC092053.2-201ENST00000640557 1818 ntBASIC21.87■■□□□ 1.09
CBX4O00257 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
CBX4O00257 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC21.87■■□□□ 1.09
CBX4O00257 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
CBX4O00257 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.87■■□□□ 1.09
CBX4O00257 AC012676.1-201ENST00000574705 1949 ntBASIC21.87■■□□□ 1.09
CBX4O00257 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC21.87■■□□□ 1.09
CBX4O00257 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21.87■■□□□ 1.09
CBX4O00257 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
CBX4O00257 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
CBX4O00257 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
CBX4O00257 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC21.87■■□□□ 1.09
CBX4O00257 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.87■■□□□ 1.09
CBX4O00257 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.86■■□□□ 1.09
CBX4O00257 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.86■■□□□ 1.09
CBX4O00257 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC21.86■■□□□ 1.09
CBX4O00257 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.86■■□□□ 1.09
CBX4O00257 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC21.86■■□□□ 1.09
CBX4O00257 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC21.86■■□□□ 1.09
CBX4O00257 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CBX4O00257 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CBX4O00257 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CBX4O00257 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CBX4O00257 AP006587.3-201ENST00000525742 1516 ntBASIC21.85■■□□□ 1.09
CBX4O00257 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CBX4O00257 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
CBX4O00257 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.85■■□□□ 1.09
CBX4O00257 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC21.85■■□□□ 1.09
CBX4O00257 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CBX4O00257 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC21.85■■□□□ 1.09
CBX4O00257 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
CBX4O00257 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
CBX4O00257 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC21.85■■□□□ 1.09
CBX4O00257 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.85■■□□□ 1.09
CBX4O00257 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.85■■□□□ 1.09
CBX4O00257 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CBX4O00257 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.85■■□□□ 1.09
CBX4O00257 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CBX4O00257 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CBX4O00257 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
CBX4O00257 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CBX4O00257 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
CBX4O00257 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC21.84■■□□□ 1.09
CBX4O00257 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
CBX4O00257 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.84■■□□□ 1.09
CBX4O00257 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
CBX4O00257 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.84■■□□□ 1.09
CBX4O00257 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.84■■□□□ 1.09
CBX4O00257 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC21.84■■□□□ 1.09
CBX4O00257 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.84■■□□□ 1.09
CBX4O00257 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CBX4O00257 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
CBX4O00257 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.83■■□□□ 1.09
CBX4O00257 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
CBX4O00257 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
CBX4O00257 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms