Protein–RNA interactions for Protein: Q9Y546

LRRC42, Leucine-rich repeat-containing protein 42, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC42Q9Y546 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LRRC42Q9Y546 LETM1P2-201ENST00000597330 2178 ntBASIC20.27■□□□□ 0.84
LRRC42Q9Y546 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.27■□□□□ 0.84
LRRC42Q9Y546 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
LRRC42Q9Y546 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LRRC42Q9Y546 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LRRC42Q9Y546 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LRRC42Q9Y546 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LRRC42Q9Y546 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
LRRC42Q9Y546 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
LRRC42Q9Y546 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
LRRC42Q9Y546 OXCT2P1-201ENST00000447263 1535 ntBASIC20.27■□□□□ 0.83
LRRC42Q9Y546 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
LRRC42Q9Y546 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
LRRC42Q9Y546 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.27■□□□□ 0.83
LRRC42Q9Y546 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC20.27■□□□□ 0.83
LRRC42Q9Y546 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.27■□□□□ 0.83
LRRC42Q9Y546 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
LRRC42Q9Y546 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LRRC42Q9Y546 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
LRRC42Q9Y546 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LRRC42Q9Y546 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC20.26■□□□□ 0.83
LRRC42Q9Y546 ABHD17AP4-201ENST00000411545 909 ntBASIC20.26■□□□□ 0.83
LRRC42Q9Y546 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC20.26■□□□□ 0.83
LRRC42Q9Y546 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC20.26■□□□□ 0.83
LRRC42Q9Y546 CEP55-201ENST00000371485 2638 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LRRC42Q9Y546 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC20.26■□□□□ 0.83
LRRC42Q9Y546 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LRRC42Q9Y546 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LRRC42Q9Y546 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LRRC42Q9Y546 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
LRRC42Q9Y546 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
LRRC42Q9Y546 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
LRRC42Q9Y546 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LRRC42Q9Y546 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
LRRC42Q9Y546 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.25■□□□□ 0.83
LRRC42Q9Y546 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
LRRC42Q9Y546 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LRRC42Q9Y546 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.25■□□□□ 0.83
LRRC42Q9Y546 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.25■□□□□ 0.83
LRRC42Q9Y546 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LRRC42Q9Y546 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LRRC42Q9Y546 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LRRC42Q9Y546 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.25■□□□□ 0.83
LRRC42Q9Y546 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
LRRC42Q9Y546 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LRRC42Q9Y546 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
LRRC42Q9Y546 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
LRRC42Q9Y546 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
LRRC42Q9Y546 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
LRRC42Q9Y546 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LRRC42Q9Y546 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.24■□□□□ 0.83
LRRC42Q9Y546 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.24■□□□□ 0.83
LRRC42Q9Y546 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LRRC42Q9Y546 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC20.24■□□□□ 0.83
LRRC42Q9Y546 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LRRC42Q9Y546 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LRRC42Q9Y546 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LRRC42Q9Y546 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
LRRC42Q9Y546 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
LRRC42Q9Y546 LINC01960-201ENST00000563759 1884 ntBASIC20.24■□□□□ 0.83
LRRC42Q9Y546 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC20.24■□□□□ 0.83
LRRC42Q9Y546 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
LRRC42Q9Y546 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC20.24■□□□□ 0.83
LRRC42Q9Y546 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
LRRC42Q9Y546 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
LRRC42Q9Y546 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.24■□□□□ 0.83
LRRC42Q9Y546 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC20.23■□□□□ 0.83
LRRC42Q9Y546 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
LRRC42Q9Y546 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LRRC42Q9Y546 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
LRRC42Q9Y546 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
LRRC42Q9Y546 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
LRRC42Q9Y546 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
LRRC42Q9Y546 TIGD6-202ENST00000515406 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LRRC42Q9Y546 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
LRRC42Q9Y546 LARGE2-206ENST00000529052 2459 ntAPPRIS ALT2 TSL 2 BASIC20.23■□□□□ 0.83
LRRC42Q9Y546 SSSCA1-AS1-201ENST00000567594 614 ntBASIC20.23■□□□□ 0.83
LRRC42Q9Y546 MOB2-207ENST00000614710 705 ntTSL 5 BASIC20.23■□□□□ 0.83
LRRC42Q9Y546 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
LRRC42Q9Y546 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
LRRC42Q9Y546 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
LRRC42Q9Y546 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LRRC42Q9Y546 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
LRRC42Q9Y546 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
LRRC42Q9Y546 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC20.22■□□□□ 0.83
LRRC42Q9Y546 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRRC42Q9Y546 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
LRRC42Q9Y546 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LRRC42Q9Y546 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
LRRC42Q9Y546 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRRC42Q9Y546 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
LRRC42Q9Y546 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.22■□□□□ 0.83
LRRC42Q9Y546 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
LRRC42Q9Y546 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.22■□□□□ 0.83
LRRC42Q9Y546 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LRRC42Q9Y546 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LRRC42Q9Y546 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.21■□□□□ 0.83
LRRC42Q9Y546 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
LRRC42Q9Y546 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms