Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.37■□□□□ 0.69
HIF3AQ9Y2N7 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HIF3AQ9Y2N7 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
HIF3AQ9Y2N7 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC19.37■□□□□ 0.69
HIF3AQ9Y2N7 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
HIF3AQ9Y2N7 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HIF3AQ9Y2N7 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HIF3AQ9Y2N7 SLC47A1P1-202ENST00000449666 945 ntBASIC19.37■□□□□ 0.69
HIF3AQ9Y2N7 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HIF3AQ9Y2N7 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC19.37■□□□□ 0.69
HIF3AQ9Y2N7 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HIF3AQ9Y2N7 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
HIF3AQ9Y2N7 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HIF3AQ9Y2N7 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC19.37■□□□□ 0.69
HIF3AQ9Y2N7 ARHGEF25-201ENST00000286494 2552 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HIF3AQ9Y2N7 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC19.36■□□□□ 0.69
HIF3AQ9Y2N7 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
HIF3AQ9Y2N7 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HIF3AQ9Y2N7 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
HIF3AQ9Y2N7 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.36■□□□□ 0.69
HIF3AQ9Y2N7 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC19.36■□□□□ 0.69
HIF3AQ9Y2N7 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC19.36■□□□□ 0.69
HIF3AQ9Y2N7 AC026310.3-201ENST00000625186 2373 ntBASIC19.36■□□□□ 0.69
HIF3AQ9Y2N7 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HIF3AQ9Y2N7 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC19.36■□□□□ 0.69
HIF3AQ9Y2N7 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HIF3AQ9Y2N7 SPIRE2-202ENST00000393062 2172 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HIF3AQ9Y2N7 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
HIF3AQ9Y2N7 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
HIF3AQ9Y2N7 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HIF3AQ9Y2N7 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
HIF3AQ9Y2N7 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.35■□□□□ 0.69
HIF3AQ9Y2N7 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HIF3AQ9Y2N7 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HIF3AQ9Y2N7 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HIF3AQ9Y2N7 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HIF3AQ9Y2N7 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.35■□□□□ 0.69
HIF3AQ9Y2N7 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.35■□□□□ 0.69
HIF3AQ9Y2N7 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.35■□□□□ 0.69
HIF3AQ9Y2N7 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HIF3AQ9Y2N7 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
HIF3AQ9Y2N7 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC19.35■□□□□ 0.69
HIF3AQ9Y2N7 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC19.35■□□□□ 0.69
HIF3AQ9Y2N7 AL136116.3-201ENST00000402907 1138 ntBASIC19.35■□□□□ 0.69
HIF3AQ9Y2N7 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC19.35■□□□□ 0.69
HIF3AQ9Y2N7 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
HIF3AQ9Y2N7 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HIF3AQ9Y2N7 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.35■□□□□ 0.69
HIF3AQ9Y2N7 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC19.35■□□□□ 0.69
HIF3AQ9Y2N7 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC19.35■□□□□ 0.69
HIF3AQ9Y2N7 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC19.34■□□□□ 0.69
HIF3AQ9Y2N7 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HIF3AQ9Y2N7 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.34■□□□□ 0.69
HIF3AQ9Y2N7 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
HIF3AQ9Y2N7 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
HIF3AQ9Y2N7 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC19.34■□□□□ 0.69
HIF3AQ9Y2N7 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HIF3AQ9Y2N7 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HIF3AQ9Y2N7 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.34■□□□□ 0.69
HIF3AQ9Y2N7 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
HIF3AQ9Y2N7 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
HIF3AQ9Y2N7 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
HIF3AQ9Y2N7 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.34■□□□□ 0.69
HIF3AQ9Y2N7 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HIF3AQ9Y2N7 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HIF3AQ9Y2N7 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HIF3AQ9Y2N7 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC19.33■□□□□ 0.69
HIF3AQ9Y2N7 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.33■□□□□ 0.69
HIF3AQ9Y2N7 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
HIF3AQ9Y2N7 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HIF3AQ9Y2N7 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
HIF3AQ9Y2N7 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC19.33■□□□□ 0.68
HIF3AQ9Y2N7 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC19.33■□□□□ 0.68
HIF3AQ9Y2N7 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC19.33■□□□□ 0.68
HIF3AQ9Y2N7 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HIF3AQ9Y2N7 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
HIF3AQ9Y2N7 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HIF3AQ9Y2N7 AC026471.6-201ENST00000622954 1905 ntBASIC19.33■□□□□ 0.68
HIF3AQ9Y2N7 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.33■□□□□ 0.68
HIF3AQ9Y2N7 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
HIF3AQ9Y2N7 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HIF3AQ9Y2N7 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HIF3AQ9Y2N7 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.32■□□□□ 0.68
HIF3AQ9Y2N7 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.32■□□□□ 0.68
HIF3AQ9Y2N7 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HIF3AQ9Y2N7 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.32■□□□□ 0.68
HIF3AQ9Y2N7 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HIF3AQ9Y2N7 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.32■□□□□ 0.68
HIF3AQ9Y2N7 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC19.32■□□□□ 0.68
HIF3AQ9Y2N7 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
HIF3AQ9Y2N7 AL034346.1-201ENST00000568244 1277 ntBASIC19.32■□□□□ 0.68
HIF3AQ9Y2N7 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
HIF3AQ9Y2N7 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC19.32■□□□□ 0.68
HIF3AQ9Y2N7 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.32■□□□□ 0.68
HIF3AQ9Y2N7 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
HIF3AQ9Y2N7 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HIF3AQ9Y2N7 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
HIF3AQ9Y2N7 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
HIF3AQ9Y2N7 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
HIF3AQ9Y2N7 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms