Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 PXK-203ENST00000383715 1756 ntTSL 5 BASIC41.05■■■■■ 4.16
SHROOM4Q9ULL8 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC41.05■■■■■ 4.16
SHROOM4Q9ULL8 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC41.05■■■■■ 4.16
SHROOM4Q9ULL8 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC41.05■■■■■ 4.16
SHROOM4Q9ULL8 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC41.05■■■■■ 4.16
SHROOM4Q9ULL8 UQCRFS1P1-201ENST00000435169 820 ntBASIC41.05■■■■■ 4.16
SHROOM4Q9ULL8 RNA5SP413-201ENST00000516373 109 ntBASIC41.05■■■■■ 4.16
SHROOM4Q9ULL8 ADM-205ENST00000528544 586 ntTSL 2 BASIC41.05■■■■■ 4.16
SHROOM4Q9ULL8 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC41.05■■■■■ 4.16
SHROOM4Q9ULL8 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC41.05■■■■■ 4.16
SHROOM4Q9ULL8 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC41.05■■■■■ 4.16
SHROOM4Q9ULL8 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC41.04■■■■■ 4.16
SHROOM4Q9ULL8 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC41.04■■■■■ 4.16
SHROOM4Q9ULL8 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC41.04■■■■■ 4.16
SHROOM4Q9ULL8 AC105036.2-201ENST00000569468 176 ntBASIC41.04■■■■■ 4.16
SHROOM4Q9ULL8 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC41.03■■■■■ 4.16
SHROOM4Q9ULL8 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC41.03■■■■■ 4.16
SHROOM4Q9ULL8 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC41.03■■■■■ 4.16
SHROOM4Q9ULL8 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC41.03■■■■■ 4.16
SHROOM4Q9ULL8 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC41.03■■■■■ 4.16
SHROOM4Q9ULL8 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC41.03■■■■■ 4.16
SHROOM4Q9ULL8 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC41.03■■■■■ 4.16
SHROOM4Q9ULL8 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC41.02■■■■■ 4.16
SHROOM4Q9ULL8 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC41.02■■■■■ 4.16
SHROOM4Q9ULL8 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC41.02■■■■■ 4.16
SHROOM4Q9ULL8 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC41.02■■■■■ 4.16
SHROOM4Q9ULL8 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC41.02■■■■■ 4.16
SHROOM4Q9ULL8 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC41.02■■■■■ 4.16
SHROOM4Q9ULL8 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC41.02■■■■■ 4.16
SHROOM4Q9ULL8 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC41.02■■■■■ 4.16
SHROOM4Q9ULL8 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC41.02■■■■■ 4.16
SHROOM4Q9ULL8 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC41.02■■■■■ 4.16
SHROOM4Q9ULL8 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC41.02■■■■■ 4.16
SHROOM4Q9ULL8 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC41.01■■■■■ 4.16
SHROOM4Q9ULL8 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC41.01■■■■■ 4.16
SHROOM4Q9ULL8 AC092118.2-201ENST00000613495 667 ntBASIC41.01■■■■■ 4.16
SHROOM4Q9ULL8 AP006294.2-201ENST00000641667 209 ntBASIC41.01■■■■■ 4.16
SHROOM4Q9ULL8 AC005224.4-201ENST00000583262 1652 ntBASIC41.01■■■■■ 4.15
SHROOM4Q9ULL8 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC41■■■■■ 4.15
SHROOM4Q9ULL8 AC093323.1-202ENST00000635031 2045 ntBASIC41■■■■■ 4.15
SHROOM4Q9ULL8 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC41■■■■■ 4.15
SHROOM4Q9ULL8 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC41■■■■■ 4.15
SHROOM4Q9ULL8 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC41■■■■■ 4.15
SHROOM4Q9ULL8 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC41■■■■■ 4.15
SHROOM4Q9ULL8 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC41■■■■■ 4.15
SHROOM4Q9ULL8 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC41■■■■■ 4.15
SHROOM4Q9ULL8 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC40.99■■■■■ 4.15
SHROOM4Q9ULL8 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC40.99■■■■■ 4.15
SHROOM4Q9ULL8 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC40.99■■■■■ 4.15
SHROOM4Q9ULL8 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC40.99■■■■■ 4.15
SHROOM4Q9ULL8 DUSP5P2-201ENST00000426873 1033 ntBASIC40.99■■■■■ 4.15
SHROOM4Q9ULL8 CYP2T1P-201ENST00000432607 1285 ntBASIC40.99■■■■■ 4.15
SHROOM4Q9ULL8 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC40.99■■■■■ 4.15
SHROOM4Q9ULL8 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC40.99■■■■■ 4.15
SHROOM4Q9ULL8 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC40.99■■■■■ 4.15
SHROOM4Q9ULL8 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC40.98■■■■■ 4.15
SHROOM4Q9ULL8 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC40.98■■■■■ 4.15
SHROOM4Q9ULL8 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC40.98■■■■■ 4.15
SHROOM4Q9ULL8 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC40.97■■■■■ 4.15
SHROOM4Q9ULL8 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC40.97■■■■■ 4.15
SHROOM4Q9ULL8 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC40.97■■■■■ 4.15
SHROOM4Q9ULL8 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC40.97■■■■■ 4.15
SHROOM4Q9ULL8 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC40.97■■■■■ 4.15
SHROOM4Q9ULL8 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC40.97■■■■■ 4.15
SHROOM4Q9ULL8 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC40.97■■■■■ 4.15
SHROOM4Q9ULL8 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC40.96■■■■■ 4.15
SHROOM4Q9ULL8 AL596275.1-201ENST00000423464 877 ntBASIC40.96■■■■■ 4.15
SHROOM4Q9ULL8 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC40.96■■■■■ 4.15
SHROOM4Q9ULL8 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC40.96■■■■■ 4.15
SHROOM4Q9ULL8 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC40.96■■■■■ 4.15
SHROOM4Q9ULL8 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC40.96■■■■■ 4.15
SHROOM4Q9ULL8 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC40.96■■■■■ 4.15
SHROOM4Q9ULL8 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC40.96■■■■■ 4.15
SHROOM4Q9ULL8 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC40.96■■■■■ 4.15
SHROOM4Q9ULL8 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC40.96■■■■■ 4.15
SHROOM4Q9ULL8 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC40.96■■■■■ 4.15
SHROOM4Q9ULL8 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC40.96■■■■■ 4.15
SHROOM4Q9ULL8 PPP1R14BP2-201ENST00000426284 444 ntBASIC40.96■■■■■ 4.15
SHROOM4Q9ULL8 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC40.96■■■■■ 4.15
SHROOM4Q9ULL8 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC40.95■■■■■ 4.15
SHROOM4Q9ULL8 LINC01960-201ENST00000563759 1884 ntBASIC40.95■■■■■ 4.15
SHROOM4Q9ULL8 IKZF1-207ENST00000413698 1808 ntTSL 1 (best) BASIC40.95■■■■■ 4.15
SHROOM4Q9ULL8 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC40.95■■■■■ 4.15
SHROOM4Q9ULL8 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC40.95■■■■■ 4.15
SHROOM4Q9ULL8 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC40.95■■■■■ 4.15
SHROOM4Q9ULL8 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC40.94■■■■■ 4.14
SHROOM4Q9ULL8 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC40.94■■■■■ 4.14
SHROOM4Q9ULL8 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC40.94■■■■■ 4.14
SHROOM4Q9ULL8 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC40.94■■■■■ 4.14
SHROOM4Q9ULL8 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC40.94■■■■■ 4.14
SHROOM4Q9ULL8 IRX5-204ENST00000560154 879 ntTSL 5 BASIC40.94■■■■■ 4.14
SHROOM4Q9ULL8 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC40.94■■■■■ 4.14
SHROOM4Q9ULL8 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC40.94■■■■■ 4.14
SHROOM4Q9ULL8 AC010536.3-201ENST00000620306 533 ntBASIC40.94■■■■■ 4.14
SHROOM4Q9ULL8 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC40.94■■■■■ 4.14
SHROOM4Q9ULL8 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC40.93■■■■■ 4.14
SHROOM4Q9ULL8 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC40.93■■■■■ 4.14
SHROOM4Q9ULL8 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC40.93■■■■■ 4.14
SHROOM4Q9ULL8 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC40.93■■■■■ 4.14
SHROOM4Q9ULL8 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC40.93■■■■■ 4.14
Retrieved 100 of 98,524 protein–RNA pairs in 42.4 ms