Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 ECEL1P1-201ENST00000373592 1742 ntBASIC23.1■■□□□ 1.29
SIX4Q9UIU6 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SIX4Q9UIU6 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
SIX4Q9UIU6 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC23.09■■□□□ 1.29
SIX4Q9UIU6 LSR-203ENST00000360798 1963 ntTSL 2 BASIC23.09■■□□□ 1.29
SIX4Q9UIU6 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
SIX4Q9UIU6 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
SIX4Q9UIU6 AL162430.1-201ENST00000480705 870 ntBASIC23.09■■□□□ 1.29
SIX4Q9UIU6 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC23.09■■□□□ 1.29
SIX4Q9UIU6 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC23.09■■□□□ 1.29
SIX4Q9UIU6 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC23.09■■□□□ 1.29
SIX4Q9UIU6 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
SIX4Q9UIU6 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
SIX4Q9UIU6 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC23.09■■□□□ 1.29
SIX4Q9UIU6 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC23.08■■□□□ 1.29
SIX4Q9UIU6 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SIX4Q9UIU6 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SIX4Q9UIU6 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC23.08■■□□□ 1.29
SIX4Q9UIU6 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC23.08■■□□□ 1.29
SIX4Q9UIU6 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
SIX4Q9UIU6 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
SIX4Q9UIU6 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
SIX4Q9UIU6 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
SIX4Q9UIU6 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
SIX4Q9UIU6 AP006587.3-201ENST00000525742 1516 ntBASIC23.08■■□□□ 1.28
SIX4Q9UIU6 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC23.07■■□□□ 1.28
SIX4Q9UIU6 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC23.07■■□□□ 1.28
SIX4Q9UIU6 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.07■■□□□ 1.28
SIX4Q9UIU6 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
SIX4Q9UIU6 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
SIX4Q9UIU6 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC23.07■■□□□ 1.28
SIX4Q9UIU6 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
SIX4Q9UIU6 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC23.07■■□□□ 1.28
SIX4Q9UIU6 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
SIX4Q9UIU6 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC23.07■■□□□ 1.28
SIX4Q9UIU6 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
SIX4Q9UIU6 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC23.07■■□□□ 1.28
SIX4Q9UIU6 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC23.07■■□□□ 1.28
SIX4Q9UIU6 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC23.07■■□□□ 1.28
SIX4Q9UIU6 AL117328.2-201ENST00000624617 1940 ntBASIC23.07■■□□□ 1.28
SIX4Q9UIU6 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC23.07■■□□□ 1.28
SIX4Q9UIU6 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC23.07■■□□□ 1.28
SIX4Q9UIU6 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
SIX4Q9UIU6 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SIX4Q9UIU6 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC23.06■■□□□ 1.28
SIX4Q9UIU6 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC23.06■■□□□ 1.28
SIX4Q9UIU6 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
SIX4Q9UIU6 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SIX4Q9UIU6 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SIX4Q9UIU6 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC23.06■■□□□ 1.28
SIX4Q9UIU6 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
SIX4Q9UIU6 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC23.06■■□□□ 1.28
SIX4Q9UIU6 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC23.06■■□□□ 1.28
SIX4Q9UIU6 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC23.06■■□□□ 1.28
SIX4Q9UIU6 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
SIX4Q9UIU6 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
SIX4Q9UIU6 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
SIX4Q9UIU6 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
SIX4Q9UIU6 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC23.06■■□□□ 1.28
SIX4Q9UIU6 AC026471.6-201ENST00000622954 1905 ntBASIC23.06■■□□□ 1.28
SIX4Q9UIU6 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
SIX4Q9UIU6 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC23.05■■□□□ 1.28
SIX4Q9UIU6 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC23.05■■□□□ 1.28
SIX4Q9UIU6 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC23.05■■□□□ 1.28
SIX4Q9UIU6 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SIX4Q9UIU6 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC23.05■■□□□ 1.28
SIX4Q9UIU6 KRT18P5-201ENST00000436075 1291 ntBASIC23.05■■□□□ 1.28
SIX4Q9UIU6 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC23.05■■□□□ 1.28
SIX4Q9UIU6 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC23.05■■□□□ 1.28
SIX4Q9UIU6 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC23.05■■□□□ 1.28
SIX4Q9UIU6 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
SIX4Q9UIU6 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
SIX4Q9UIU6 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
SIX4Q9UIU6 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
SIX4Q9UIU6 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC23.04■■□□□ 1.28
SIX4Q9UIU6 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SIX4Q9UIU6 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC23.04■■□□□ 1.28
SIX4Q9UIU6 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC23.04■■□□□ 1.28
SIX4Q9UIU6 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC23.04■■□□□ 1.28
SIX4Q9UIU6 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SIX4Q9UIU6 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC23.04■■□□□ 1.28
SIX4Q9UIU6 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
SIX4Q9UIU6 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
SIX4Q9UIU6 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
SIX4Q9UIU6 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SIX4Q9UIU6 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC23.03■■□□□ 1.28
SIX4Q9UIU6 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC23.03■■□□□ 1.28
SIX4Q9UIU6 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
SIX4Q9UIU6 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
SIX4Q9UIU6 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SIX4Q9UIU6 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
SIX4Q9UIU6 FAM99A-202ENST00000538190 1989 ntBASIC23.03■■□□□ 1.28
SIX4Q9UIU6 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC23.03■■□□□ 1.28
SIX4Q9UIU6 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
SIX4Q9UIU6 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC23.03■■□□□ 1.28
SIX4Q9UIU6 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
SIX4Q9UIU6 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SIX4Q9UIU6 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
SIX4Q9UIU6 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
SIX4Q9UIU6 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC23.02■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 14.2 ms