Protein–RNA interactions for Protein: Q9NPD3

EXOSC4, Exosome complex component RRP41, humanhuman

Known RBP Predictions only

Length 245 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC4Q9NPD3 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.35■□□□□ 0.69
EXOSC4Q9NPD3 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
EXOSC4Q9NPD3 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
EXOSC4Q9NPD3 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
EXOSC4Q9NPD3 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
EXOSC4Q9NPD3 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
EXOSC4Q9NPD3 BEX3-202ENST00000372634 753 ntTSL 2 BASIC19.35■□□□□ 0.69
EXOSC4Q9NPD3 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC19.35■□□□□ 0.69
EXOSC4Q9NPD3 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
EXOSC4Q9NPD3 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC19.35■□□□□ 0.69
EXOSC4Q9NPD3 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
EXOSC4Q9NPD3 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
EXOSC4Q9NPD3 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
EXOSC4Q9NPD3 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.35■□□□□ 0.69
EXOSC4Q9NPD3 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.35■□□□□ 0.69
EXOSC4Q9NPD3 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
EXOSC4Q9NPD3 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
EXOSC4Q9NPD3 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
EXOSC4Q9NPD3 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC19.34■□□□□ 0.69
EXOSC4Q9NPD3 RNF165-205ENST00000588679 2904 ntBASIC19.34■□□□□ 0.69
EXOSC4Q9NPD3 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
EXOSC4Q9NPD3 AC120024.1-201ENST00000562672 995 ntBASIC19.34■□□□□ 0.69
EXOSC4Q9NPD3 AL033527.3-201ENST00000566366 1196 ntBASIC19.34■□□□□ 0.69
EXOSC4Q9NPD3 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC19.34■□□□□ 0.69
EXOSC4Q9NPD3 THA1P-201ENST00000590384 1145 ntBASIC19.34■□□□□ 0.69
EXOSC4Q9NPD3 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
EXOSC4Q9NPD3 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
EXOSC4Q9NPD3 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.34■□□□□ 0.69
EXOSC4Q9NPD3 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.34■□□□□ 0.69
EXOSC4Q9NPD3 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
EXOSC4Q9NPD3 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC19.33■□□□□ 0.69
EXOSC4Q9NPD3 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
EXOSC4Q9NPD3 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
EXOSC4Q9NPD3 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
EXOSC4Q9NPD3 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
EXOSC4Q9NPD3 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.68
EXOSC4Q9NPD3 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC19.33■□□□□ 0.68
EXOSC4Q9NPD3 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC19.33■□□□□ 0.68
EXOSC4Q9NPD3 PVT1_1.1-201ENST00000615125 194 ntBASIC19.33■□□□□ 0.68
EXOSC4Q9NPD3 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
EXOSC4Q9NPD3 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC19.33■□□□□ 0.68
EXOSC4Q9NPD3 FEM1AP4-201ENST00000443167 1987 ntBASIC19.33■□□□□ 0.68
EXOSC4Q9NPD3 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
EXOSC4Q9NPD3 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
EXOSC4Q9NPD3 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
EXOSC4Q9NPD3 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
EXOSC4Q9NPD3 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
EXOSC4Q9NPD3 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
EXOSC4Q9NPD3 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
EXOSC4Q9NPD3 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.32■□□□□ 0.68
EXOSC4Q9NPD3 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.32■□□□□ 0.68
EXOSC4Q9NPD3 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC19.32■□□□□ 0.68
EXOSC4Q9NPD3 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC19.32■□□□□ 0.68
EXOSC4Q9NPD3 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC19.32■□□□□ 0.68
EXOSC4Q9NPD3 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC19.32■□□□□ 0.68
EXOSC4Q9NPD3 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC19.32■□□□□ 0.68
EXOSC4Q9NPD3 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC19.32■□□□□ 0.68
EXOSC4Q9NPD3 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC19.32■□□□□ 0.68
EXOSC4Q9NPD3 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
EXOSC4Q9NPD3 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
EXOSC4Q9NPD3 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.32■□□□□ 0.68
EXOSC4Q9NPD3 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
EXOSC4Q9NPD3 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
EXOSC4Q9NPD3 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
EXOSC4Q9NPD3 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.31■□□□□ 0.68
EXOSC4Q9NPD3 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
EXOSC4Q9NPD3 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
EXOSC4Q9NPD3 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC19.31■□□□□ 0.68
EXOSC4Q9NPD3 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
EXOSC4Q9NPD3 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
EXOSC4Q9NPD3 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
EXOSC4Q9NPD3 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
EXOSC4Q9NPD3 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
EXOSC4Q9NPD3 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.3■□□□□ 0.68
EXOSC4Q9NPD3 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.3■□□□□ 0.68
EXOSC4Q9NPD3 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.3■□□□□ 0.68
EXOSC4Q9NPD3 KRT18P24-201ENST00000344739 1156 ntBASIC19.3■□□□□ 0.68
EXOSC4Q9NPD3 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC19.3■□□□□ 0.68
EXOSC4Q9NPD3 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC19.3■□□□□ 0.68
EXOSC4Q9NPD3 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC19.3■□□□□ 0.68
EXOSC4Q9NPD3 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
EXOSC4Q9NPD3 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.3■□□□□ 0.68
EXOSC4Q9NPD3 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
EXOSC4Q9NPD3 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.29■□□□□ 0.68
EXOSC4Q9NPD3 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
EXOSC4Q9NPD3 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
EXOSC4Q9NPD3 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.29■□□□□ 0.68
EXOSC4Q9NPD3 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
EXOSC4Q9NPD3 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
EXOSC4Q9NPD3 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
EXOSC4Q9NPD3 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
EXOSC4Q9NPD3 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC19.29■□□□□ 0.68
EXOSC4Q9NPD3 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC19.29■□□□□ 0.68
EXOSC4Q9NPD3 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
EXOSC4Q9NPD3 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
EXOSC4Q9NPD3 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
EXOSC4Q9NPD3 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
EXOSC4Q9NPD3 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
EXOSC4Q9NPD3 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
EXOSC4Q9NPD3 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 131.8 ms