Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TM9SF3Q9HD45 MIR663A-201ENST00000385250 93 ntBASIC21.48■■□□□ 1.03
TM9SF3Q9HD45 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
TM9SF3Q9HD45 NCF1B-203ENST00000435988 1254 ntBASIC21.48■■□□□ 1.03
TM9SF3Q9HD45 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
TM9SF3Q9HD45 MDK-213ENST00000617138 635 ntTSL 2 BASIC21.48■■□□□ 1.03
TM9SF3Q9HD45 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
TM9SF3Q9HD45 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
TM9SF3Q9HD45 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC21.48■■□□□ 1.03
TM9SF3Q9HD45 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TM9SF3Q9HD45 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC21.48■■□□□ 1.03
TM9SF3Q9HD45 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
TM9SF3Q9HD45 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
TM9SF3Q9HD45 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
TM9SF3Q9HD45 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
TM9SF3Q9HD45 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.48■■□□□ 1.03
TM9SF3Q9HD45 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
TM9SF3Q9HD45 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
TM9SF3Q9HD45 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TM9SF3Q9HD45 AC009237.3-201ENST00000393279 1427 ntBASIC21.47■■□□□ 1.03
TM9SF3Q9HD45 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.47■■□□□ 1.03
TM9SF3Q9HD45 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TM9SF3Q9HD45 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
TM9SF3Q9HD45 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TM9SF3Q9HD45 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TM9SF3Q9HD45 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TM9SF3Q9HD45 AL355802.2-201ENST00000402069 882 ntBASIC21.47■■□□□ 1.03
TM9SF3Q9HD45 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.47■■□□□ 1.03
TM9SF3Q9HD45 AC104187.1-201ENST00000607510 612 ntBASIC21.47■■□□□ 1.03
TM9SF3Q9HD45 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TM9SF3Q9HD45 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TM9SF3Q9HD45 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TM9SF3Q9HD45 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.47■■□□□ 1.03
TM9SF3Q9HD45 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TM9SF3Q9HD45 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
TM9SF3Q9HD45 KRT87P-202ENST00000534226 1464 ntBASIC21.46■■□□□ 1.03
TM9SF3Q9HD45 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TM9SF3Q9HD45 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC21.46■■□□□ 1.03
TM9SF3Q9HD45 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TM9SF3Q9HD45 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
TM9SF3Q9HD45 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC21.46■■□□□ 1.03
TM9SF3Q9HD45 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC21.46■■□□□ 1.03
TM9SF3Q9HD45 MFSD11-216ENST00000590393 1141 ntBASIC21.46■■□□□ 1.03
TM9SF3Q9HD45 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TM9SF3Q9HD45 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
TM9SF3Q9HD45 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.46■■□□□ 1.03
TM9SF3Q9HD45 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC21.46■■□□□ 1.03
TM9SF3Q9HD45 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC21.45■■□□□ 1.02
TM9SF3Q9HD45 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
TM9SF3Q9HD45 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
TM9SF3Q9HD45 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.45■■□□□ 1.02
TM9SF3Q9HD45 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
TM9SF3Q9HD45 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC21.45■■□□□ 1.02
TM9SF3Q9HD45 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TM9SF3Q9HD45 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
TM9SF3Q9HD45 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.44■■□□□ 1.02
TM9SF3Q9HD45 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
TM9SF3Q9HD45 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC21.44■■□□□ 1.02
TM9SF3Q9HD45 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.44■■□□□ 1.02
TM9SF3Q9HD45 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.44■■□□□ 1.02
TM9SF3Q9HD45 WT1-AS_3.1-201ENST00000613262 234 ntBASIC21.44■■□□□ 1.02
TM9SF3Q9HD45 AL117328.2-201ENST00000624617 1940 ntBASIC21.44■■□□□ 1.02
TM9SF3Q9HD45 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TM9SF3Q9HD45 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.43■■□□□ 1.02
TM9SF3Q9HD45 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
TM9SF3Q9HD45 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TM9SF3Q9HD45 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC21.43■■□□□ 1.02
TM9SF3Q9HD45 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.43■■□□□ 1.02
TM9SF3Q9HD45 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TM9SF3Q9HD45 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TM9SF3Q9HD45 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TM9SF3Q9HD45 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TM9SF3Q9HD45 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
TM9SF3Q9HD45 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
TM9SF3Q9HD45 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TM9SF3Q9HD45 GPX1P1-201ENST00000388829 606 ntBASIC21.42■■□□□ 1.02
TM9SF3Q9HD45 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.42■■□□□ 1.02
TM9SF3Q9HD45 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.42■■□□□ 1.02
TM9SF3Q9HD45 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
TM9SF3Q9HD45 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.42■■□□□ 1.02
TM9SF3Q9HD45 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC21.42■■□□□ 1.02
TM9SF3Q9HD45 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.42■■□□□ 1.02
TM9SF3Q9HD45 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
TM9SF3Q9HD45 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
TM9SF3Q9HD45 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC21.42■■□□□ 1.02
TM9SF3Q9HD45 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TM9SF3Q9HD45 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TM9SF3Q9HD45 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
TM9SF3Q9HD45 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
TM9SF3Q9HD45 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.41■■□□□ 1.02
TM9SF3Q9HD45 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC21.41■■□□□ 1.02
TM9SF3Q9HD45 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
TM9SF3Q9HD45 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC21.41■■□□□ 1.02
TM9SF3Q9HD45 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC21.41■■□□□ 1.02
TM9SF3Q9HD45 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC21.41■■□□□ 1.02
TM9SF3Q9HD45 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
TM9SF3Q9HD45 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC21.41■■□□□ 1.02
TM9SF3Q9HD45 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TM9SF3Q9HD45 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
TM9SF3Q9HD45 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms