Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM39Q9HCM9 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
TRIM39Q9HCM9 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM39Q9HCM9 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC21.25■□□□□ 0.99
TRIM39Q9HCM9 AC005224.4-201ENST00000583262 1652 ntBASIC21.25■□□□□ 0.99
TRIM39Q9HCM9 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.25■□□□□ 0.99
TRIM39Q9HCM9 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
TRIM39Q9HCM9 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.25■□□□□ 0.99
TRIM39Q9HCM9 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC21.25■□□□□ 0.99
TRIM39Q9HCM9 DUX4L2-201ENST00000561772 1275 ntBASIC21.25■□□□□ 0.99
TRIM39Q9HCM9 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM39Q9HCM9 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.25■□□□□ 0.99
TRIM39Q9HCM9 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.25■□□□□ 0.99
TRIM39Q9HCM9 DUX4L6-201ENST00000626483 1275 ntBASIC21.25■□□□□ 0.99
TRIM39Q9HCM9 DUX4L1-201ENST00000627662 1275 ntBASIC21.25■□□□□ 0.99
TRIM39Q9HCM9 DUX4L8-201ENST00000629013 1275 ntBASIC21.25■□□□□ 0.99
TRIM39Q9HCM9 DUX4L3-201ENST00000630187 1275 ntBASIC21.25■□□□□ 0.99
TRIM39Q9HCM9 DUX4L7-201ENST00000630678 1275 ntBASIC21.25■□□□□ 0.99
TRIM39Q9HCM9 DUX4L5-201ENST00000630834 1275 ntBASIC21.25■□□□□ 0.99
TRIM39Q9HCM9 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC21.25■□□□□ 0.99
TRIM39Q9HCM9 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM39Q9HCM9 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM39Q9HCM9 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM39Q9HCM9 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM39Q9HCM9 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
TRIM39Q9HCM9 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM39Q9HCM9 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM39Q9HCM9 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
TRIM39Q9HCM9 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.24■□□□□ 0.99
TRIM39Q9HCM9 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC21.24■□□□□ 0.99
TRIM39Q9HCM9 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.24■□□□□ 0.99
TRIM39Q9HCM9 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.24■□□□□ 0.99
TRIM39Q9HCM9 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.24■□□□□ 0.99
TRIM39Q9HCM9 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.24■□□□□ 0.99
TRIM39Q9HCM9 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM39Q9HCM9 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM39Q9HCM9 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM39Q9HCM9 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM39Q9HCM9 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
TRIM39Q9HCM9 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.24■□□□□ 0.99
TRIM39Q9HCM9 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM39Q9HCM9 AC233723.2-201ENST00000623798 2106 ntBASIC21.23■□□□□ 0.99
TRIM39Q9HCM9 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM39Q9HCM9 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM39Q9HCM9 TPSG1-201ENST00000234798 1108 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM39Q9HCM9 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.23■□□□□ 0.99
TRIM39Q9HCM9 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM39Q9HCM9 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.23■□□□□ 0.99
TRIM39Q9HCM9 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
TRIM39Q9HCM9 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM39Q9HCM9 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC21.23■□□□□ 0.99
TRIM39Q9HCM9 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
TRIM39Q9HCM9 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM39Q9HCM9 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM39Q9HCM9 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC21.23■□□□□ 0.99
TRIM39Q9HCM9 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM39Q9HCM9 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.23■□□□□ 0.99
TRIM39Q9HCM9 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.23■□□□□ 0.99
TRIM39Q9HCM9 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
TRIM39Q9HCM9 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM39Q9HCM9 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM39Q9HCM9 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM39Q9HCM9 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM39Q9HCM9 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.22■□□□□ 0.99
TRIM39Q9HCM9 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
TRIM39Q9HCM9 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM39Q9HCM9 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
TRIM39Q9HCM9 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM39Q9HCM9 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC21.22■□□□□ 0.99
TRIM39Q9HCM9 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM39Q9HCM9 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC21.22■□□□□ 0.99
TRIM39Q9HCM9 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.22■□□□□ 0.99
TRIM39Q9HCM9 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.22■□□□□ 0.99
TRIM39Q9HCM9 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.22■□□□□ 0.99
TRIM39Q9HCM9 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.22■□□□□ 0.99
TRIM39Q9HCM9 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.22■□□□□ 0.99
TRIM39Q9HCM9 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM39Q9HCM9 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM39Q9HCM9 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.22■□□□□ 0.99
TRIM39Q9HCM9 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
TRIM39Q9HCM9 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM39Q9HCM9 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.21■□□□□ 0.99
TRIM39Q9HCM9 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM39Q9HCM9 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.21■□□□□ 0.99
TRIM39Q9HCM9 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM39Q9HCM9 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.21■□□□□ 0.99
TRIM39Q9HCM9 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.21■□□□□ 0.99
TRIM39Q9HCM9 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM39Q9HCM9 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM39Q9HCM9 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM39Q9HCM9 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.21■□□□□ 0.99
TRIM39Q9HCM9 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.21■□□□□ 0.99
TRIM39Q9HCM9 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM39Q9HCM9 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
TRIM39Q9HCM9 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.2■□□□□ 0.98
TRIM39Q9HCM9 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM39Q9HCM9 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
TRIM39Q9HCM9 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TRIM39Q9HCM9 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
TRIM39Q9HCM9 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms