Protein–RNA interactions for Protein: Q9H269

VPS16, Vacuolar protein sorting-associated protein 16 homolog, humanhuman

Predictions only

Length 839 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS16Q9H269 TBX1-203ENST00000359500 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
VPS16Q9H269 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
VPS16Q9H269 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
VPS16Q9H269 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
VPS16Q9H269 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC23.57■■□□□ 1.36
VPS16Q9H269 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
VPS16Q9H269 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
VPS16Q9H269 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC23.56■■□□□ 1.36
VPS16Q9H269 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
VPS16Q9H269 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
VPS16Q9H269 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
VPS16Q9H269 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC23.56■■□□□ 1.36
VPS16Q9H269 AC010525.1-201ENST00000585559 441 ntBASIC23.56■■□□□ 1.36
VPS16Q9H269 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC23.56■■□□□ 1.36
VPS16Q9H269 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
VPS16Q9H269 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
VPS16Q9H269 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC23.56■■□□□ 1.36
VPS16Q9H269 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
VPS16Q9H269 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC23.56■■□□□ 1.36
VPS16Q9H269 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
VPS16Q9H269 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
VPS16Q9H269 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC23.56■■□□□ 1.36
VPS16Q9H269 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC23.55■■□□□ 1.36
VPS16Q9H269 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
VPS16Q9H269 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
VPS16Q9H269 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
VPS16Q9H269 SRD5A1P1-201ENST00000442297 786 ntBASIC23.55■■□□□ 1.36
VPS16Q9H269 OR2I1P-207ENST00000453522 948 ntBASIC23.55■■□□□ 1.36
VPS16Q9H269 AL512631.2-201ENST00000604634 923 ntBASIC23.55■■□□□ 1.36
VPS16Q9H269 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
VPS16Q9H269 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
VPS16Q9H269 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
VPS16Q9H269 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
VPS16Q9H269 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC23.54■■□□□ 1.36
VPS16Q9H269 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC23.54■■□□□ 1.36
VPS16Q9H269 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
VPS16Q9H269 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC23.54■■□□□ 1.36
VPS16Q9H269 SPRN-201ENST00000414069 3128 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
VPS16Q9H269 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC23.54■■□□□ 1.36
VPS16Q9H269 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC23.54■■□□□ 1.36
VPS16Q9H269 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC23.54■■□□□ 1.36
VPS16Q9H269 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC23.54■■□□□ 1.36
VPS16Q9H269 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
VPS16Q9H269 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC23.53■■□□□ 1.36
VPS16Q9H269 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
VPS16Q9H269 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC23.53■■□□□ 1.36
VPS16Q9H269 FEM1AP4-201ENST00000443167 1987 ntBASIC23.53■■□□□ 1.36
VPS16Q9H269 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC23.53■■□□□ 1.36
VPS16Q9H269 TRIR-205ENST00000592273 783 ntTSL 3 BASIC23.53■■□□□ 1.36
VPS16Q9H269 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC23.53■■□□□ 1.36
VPS16Q9H269 AC068587.7-201ENST00000641602 218 ntBASIC23.53■■□□□ 1.36
VPS16Q9H269 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC23.53■■□□□ 1.36
VPS16Q9H269 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
VPS16Q9H269 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC23.53■■□□□ 1.36
VPS16Q9H269 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
VPS16Q9H269 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
VPS16Q9H269 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
VPS16Q9H269 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
VPS16Q9H269 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC23.52■■□□□ 1.36
VPS16Q9H269 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
VPS16Q9H269 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC23.52■■□□□ 1.36
VPS16Q9H269 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC23.52■■□□□ 1.36
VPS16Q9H269 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC23.51■■□□□ 1.35
VPS16Q9H269 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC23.51■■□□□ 1.35
VPS16Q9H269 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS16Q9H269 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS16Q9H269 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC23.51■■□□□ 1.35
VPS16Q9H269 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS16Q9H269 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC23.51■■□□□ 1.35
VPS16Q9H269 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC23.51■■□□□ 1.35
VPS16Q9H269 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC23.51■■□□□ 1.35
VPS16Q9H269 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
VPS16Q9H269 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC23.5■■□□□ 1.35
VPS16Q9H269 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
VPS16Q9H269 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
VPS16Q9H269 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
VPS16Q9H269 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC23.5■■□□□ 1.35
VPS16Q9H269 AC010141.3-201ENST00000456659 717 ntBASIC23.5■■□□□ 1.35
VPS16Q9H269 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC23.5■■□□□ 1.35
VPS16Q9H269 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC23.5■■□□□ 1.35
VPS16Q9H269 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
VPS16Q9H269 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
VPS16Q9H269 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC23.5■■□□□ 1.35
VPS16Q9H269 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC23.5■■□□□ 1.35
VPS16Q9H269 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
VPS16Q9H269 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC23.49■■□□□ 1.35
VPS16Q9H269 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC23.49■■□□□ 1.35
VPS16Q9H269 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
VPS16Q9H269 SRR-208ENST00000576848 588 ntTSL 4 BASIC23.49■■□□□ 1.35
VPS16Q9H269 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC23.49■■□□□ 1.35
VPS16Q9H269 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC23.49■■□□□ 1.35
VPS16Q9H269 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC23.49■■□□□ 1.35
VPS16Q9H269 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC23.49■■□□□ 1.35
VPS16Q9H269 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC23.49■■□□□ 1.35
VPS16Q9H269 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC23.49■■□□□ 1.35
VPS16Q9H269 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
VPS16Q9H269 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC23.48■■□□□ 1.35
VPS16Q9H269 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
VPS16Q9H269 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
VPS16Q9H269 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms