Protein–RNA interactions for Protein: Q96S90

LYSMD1, LysM and putative peptidoglycan-binding domain-containing protein 1, humanhuman

Predictions only

Length 227 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD1Q96S90 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LYSMD1Q96S90 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LYSMD1Q96S90 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LYSMD1Q96S90 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
LYSMD1Q96S90 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC21.44■■□□□ 1.02
LYSMD1Q96S90 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.44■■□□□ 1.02
LYSMD1Q96S90 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
LYSMD1Q96S90 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LYSMD1Q96S90 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LYSMD1Q96S90 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
LYSMD1Q96S90 MIR935-201ENST00000401179 91 ntBASIC21.44■■□□□ 1.02
LYSMD1Q96S90 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LYSMD1Q96S90 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC21.44■■□□□ 1.02
LYSMD1Q96S90 AC087623.3-201ENST00000607047 1098 ntBASIC21.44■■□□□ 1.02
LYSMD1Q96S90 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LYSMD1Q96S90 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LYSMD1Q96S90 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LYSMD1Q96S90 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LYSMD1Q96S90 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LYSMD1Q96S90 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LYSMD1Q96S90 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
LYSMD1Q96S90 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC21.43■■□□□ 1.02
LYSMD1Q96S90 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.43■■□□□ 1.02
LYSMD1Q96S90 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC21.43■■□□□ 1.02
LYSMD1Q96S90 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LYSMD1Q96S90 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
LYSMD1Q96S90 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LYSMD1Q96S90 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
LYSMD1Q96S90 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LYSMD1Q96S90 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LYSMD1Q96S90 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.42■■□□□ 1.02
LYSMD1Q96S90 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.42■■□□□ 1.02
LYSMD1Q96S90 KRT18P14-201ENST00000534205 1250 ntBASIC21.42■■□□□ 1.02
LYSMD1Q96S90 FAM99A-202ENST00000538190 1989 ntBASIC21.42■■□□□ 1.02
LYSMD1Q96S90 DUX4L2-201ENST00000561772 1275 ntBASIC21.42■■□□□ 1.02
LYSMD1Q96S90 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC21.42■■□□□ 1.02
LYSMD1Q96S90 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC21.42■■□□□ 1.02
LYSMD1Q96S90 DUX4L6-201ENST00000626483 1275 ntBASIC21.42■■□□□ 1.02
LYSMD1Q96S90 DUX4L1-201ENST00000627662 1275 ntBASIC21.42■■□□□ 1.02
LYSMD1Q96S90 DUX4L8-201ENST00000629013 1275 ntBASIC21.42■■□□□ 1.02
LYSMD1Q96S90 DUX4L3-201ENST00000630187 1275 ntBASIC21.42■■□□□ 1.02
LYSMD1Q96S90 DUX4L7-201ENST00000630678 1275 ntBASIC21.42■■□□□ 1.02
LYSMD1Q96S90 DUX4L5-201ENST00000630834 1275 ntBASIC21.42■■□□□ 1.02
LYSMD1Q96S90 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.42■■□□□ 1.02
LYSMD1Q96S90 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LYSMD1Q96S90 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
LYSMD1Q96S90 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
LYSMD1Q96S90 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
LYSMD1Q96S90 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.41■■□□□ 1.02
LYSMD1Q96S90 AC034268.1-201ENST00000441047 882 ntBASIC21.41■■□□□ 1.02
LYSMD1Q96S90 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
LYSMD1Q96S90 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.41■■□□□ 1.02
LYSMD1Q96S90 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
LYSMD1Q96S90 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.41■■□□□ 1.02
LYSMD1Q96S90 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.41■■□□□ 1.02
LYSMD1Q96S90 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LYSMD1Q96S90 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LYSMD1Q96S90 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LYSMD1Q96S90 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
LYSMD1Q96S90 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LYSMD1Q96S90 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LYSMD1Q96S90 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.4■■□□□ 1.02
LYSMD1Q96S90 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC21.4■■□□□ 1.02
LYSMD1Q96S90 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
LYSMD1Q96S90 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
LYSMD1Q96S90 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.39■■□□□ 1.02
LYSMD1Q96S90 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.39■■□□□ 1.02
LYSMD1Q96S90 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
LYSMD1Q96S90 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
LYSMD1Q96S90 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
LYSMD1Q96S90 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
LYSMD1Q96S90 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.39■■□□□ 1.01
LYSMD1Q96S90 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
LYSMD1Q96S90 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC21.39■■□□□ 1.01
LYSMD1Q96S90 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.39■■□□□ 1.01
LYSMD1Q96S90 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.01
LYSMD1Q96S90 C11orf96-202ENST00000528572 1834 ntBASIC21.39■■□□□ 1.01
LYSMD1Q96S90 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
LYSMD1Q96S90 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
LYSMD1Q96S90 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
LYSMD1Q96S90 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.38■■□□□ 1.01
LYSMD1Q96S90 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC21.38■■□□□ 1.01
LYSMD1Q96S90 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC21.38■■□□□ 1.01
LYSMD1Q96S90 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.38■■□□□ 1.01
LYSMD1Q96S90 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC21.38■■□□□ 1.01
LYSMD1Q96S90 MIR5787-201ENST00000611784 55 ntBASIC21.38■■□□□ 1.01
LYSMD1Q96S90 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.37■■□□□ 1.01
LYSMD1Q96S90 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LYSMD1Q96S90 HACD1-201ENST00000326961 773 ntTSL 2 BASIC21.37■■□□□ 1.01
LYSMD1Q96S90 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LYSMD1Q96S90 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC21.37■■□□□ 1.01
LYSMD1Q96S90 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LYSMD1Q96S90 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC21.37■■□□□ 1.01
LYSMD1Q96S90 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
LYSMD1Q96S90 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC21.37■■□□□ 1.01
LYSMD1Q96S90 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC21.37■■□□□ 1.01
LYSMD1Q96S90 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
LYSMD1Q96S90 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.37■■□□□ 1.01
LYSMD1Q96S90 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
LYSMD1Q96S90 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.37■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 73.6 ms