Protein–RNA interactions for Protein: Q96PY6

NEK1, Serine/threonine-protein kinase Nek1, humanhuman

Predictions only

Length 1,258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK1Q96PY6 AP004607.7-201ENST00000527152 1677 ntBASIC25.48■■□□□ 1.67
NEK1Q96PY6 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
NEK1Q96PY6 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC25.48■■□□□ 1.67
NEK1Q96PY6 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC25.47■■□□□ 1.67
NEK1Q96PY6 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC25.47■■□□□ 1.67
NEK1Q96PY6 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC25.47■■□□□ 1.67
NEK1Q96PY6 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC25.47■■□□□ 1.67
NEK1Q96PY6 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC25.47■■□□□ 1.67
NEK1Q96PY6 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
NEK1Q96PY6 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC25.47■■□□□ 1.67
NEK1Q96PY6 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC25.47■■□□□ 1.67
NEK1Q96PY6 ME2-206ENST00000638410 2289 ntTSL 5 BASIC25.47■■□□□ 1.67
NEK1Q96PY6 ME2-210ENST00000639255 2262 ntTSL 5 BASIC25.47■■□□□ 1.67
NEK1Q96PY6 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC25.46■■□□□ 1.67
NEK1Q96PY6 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
NEK1Q96PY6 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
NEK1Q96PY6 GOLGA2P6-201ENST00000340929 2049 ntBASIC25.46■■□□□ 1.67
NEK1Q96PY6 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC25.46■■□□□ 1.67
NEK1Q96PY6 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
NEK1Q96PY6 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC25.46■■□□□ 1.67
NEK1Q96PY6 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC25.46■■□□□ 1.67
NEK1Q96PY6 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
NEK1Q96PY6 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
NEK1Q96PY6 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
NEK1Q96PY6 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC25.46■■□□□ 1.67
NEK1Q96PY6 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC25.46■■□□□ 1.67
NEK1Q96PY6 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC25.46■■□□□ 1.67
NEK1Q96PY6 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
NEK1Q96PY6 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
NEK1Q96PY6 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC25.46■■□□□ 1.67
NEK1Q96PY6 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
NEK1Q96PY6 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC25.45■■□□□ 1.67
NEK1Q96PY6 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC25.45■■□□□ 1.67
NEK1Q96PY6 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC25.45■■□□□ 1.66
NEK1Q96PY6 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC25.45■■□□□ 1.66
NEK1Q96PY6 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
NEK1Q96PY6 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
NEK1Q96PY6 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC25.45■■□□□ 1.66
NEK1Q96PY6 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC25.45■■□□□ 1.66
NEK1Q96PY6 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
NEK1Q96PY6 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
NEK1Q96PY6 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
NEK1Q96PY6 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
NEK1Q96PY6 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
NEK1Q96PY6 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC25.44■■□□□ 1.66
NEK1Q96PY6 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
NEK1Q96PY6 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
NEK1Q96PY6 AL034346.1-201ENST00000568244 1277 ntBASIC25.44■■□□□ 1.66
NEK1Q96PY6 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC25.44■■□□□ 1.66
NEK1Q96PY6 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC25.43■■□□□ 1.66
NEK1Q96PY6 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
NEK1Q96PY6 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
NEK1Q96PY6 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
NEK1Q96PY6 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
NEK1Q96PY6 LHPP-203ENST00000392757 840 ntTSL 3 BASIC25.43■■□□□ 1.66
NEK1Q96PY6 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC25.43■■□□□ 1.66
NEK1Q96PY6 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC25.43■■□□□ 1.66
NEK1Q96PY6 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC25.43■■□□□ 1.66
NEK1Q96PY6 AC005837.3-201ENST00000612163 286 ntBASIC25.43■■□□□ 1.66
NEK1Q96PY6 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
NEK1Q96PY6 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC25.43■■□□□ 1.66
NEK1Q96PY6 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC25.43■■□□□ 1.66
NEK1Q96PY6 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC25.42■■□□□ 1.66
NEK1Q96PY6 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
NEK1Q96PY6 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC25.42■■□□□ 1.66
NEK1Q96PY6 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC25.42■■□□□ 1.66
NEK1Q96PY6 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
NEK1Q96PY6 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
NEK1Q96PY6 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
NEK1Q96PY6 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
NEK1Q96PY6 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
NEK1Q96PY6 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
NEK1Q96PY6 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
NEK1Q96PY6 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC25.41■■□□□ 1.66
NEK1Q96PY6 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
NEK1Q96PY6 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC25.41■■□□□ 1.66
NEK1Q96PY6 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC25.41■■□□□ 1.66
NEK1Q96PY6 AC142381.2-201ENST00000566120 298 ntBASIC25.41■■□□□ 1.66
NEK1Q96PY6 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
NEK1Q96PY6 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
NEK1Q96PY6 ASL-203ENST00000380839 1765 ntTSL 5 BASIC25.41■■□□□ 1.66
NEK1Q96PY6 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC25.4■■□□□ 1.66
NEK1Q96PY6 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC25.4■■□□□ 1.66
NEK1Q96PY6 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC25.4■■□□□ 1.66
NEK1Q96PY6 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
NEK1Q96PY6 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC25.4■■□□□ 1.66
NEK1Q96PY6 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC25.4■■□□□ 1.66
NEK1Q96PY6 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
NEK1Q96PY6 EBPL-204ENST00000378272 766 ntTSL 3 BASIC25.4■■□□□ 1.66
NEK1Q96PY6 MIR572-201ENST00000384983 95 ntBASIC25.4■■□□□ 1.66
NEK1Q96PY6 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.66
NEK1Q96PY6 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
NEK1Q96PY6 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC25.4■■□□□ 1.66
NEK1Q96PY6 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
NEK1Q96PY6 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
NEK1Q96PY6 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
NEK1Q96PY6 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.66
NEK1Q96PY6 CLDN5-201ENST00000403084 2357 ntBASIC25.39■■□□□ 1.66
NEK1Q96PY6 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC25.39■■□□□ 1.66
NEK1Q96PY6 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC25.39■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms