Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
USP47Q96K76 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC30.23■■■□□ 2.43
USP47Q96K76 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC30.23■■■□□ 2.43
USP47Q96K76 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC30.23■■■□□ 2.43
USP47Q96K76 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
USP47Q96K76 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC30.23■■■□□ 2.43
USP47Q96K76 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
USP47Q96K76 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC30.23■■■□□ 2.43
USP47Q96K76 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
USP47Q96K76 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC30.23■■■□□ 2.43
USP47Q96K76 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
USP47Q96K76 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC30.22■■■□□ 2.43
USP47Q96K76 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC30.22■■■□□ 2.43
USP47Q96K76 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC30.22■■■□□ 2.43
USP47Q96K76 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
USP47Q96K76 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
USP47Q96K76 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC30.22■■■□□ 2.43
USP47Q96K76 AC026471.6-201ENST00000622954 1905 ntBASIC30.22■■■□□ 2.43
USP47Q96K76 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC30.22■■■□□ 2.43
USP47Q96K76 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC30.22■■■□□ 2.43
USP47Q96K76 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC30.22■■■□□ 2.43
USP47Q96K76 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC30.22■■■□□ 2.43
USP47Q96K76 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC30.22■■■□□ 2.43
USP47Q96K76 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
USP47Q96K76 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
USP47Q96K76 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC30.21■■■□□ 2.43
USP47Q96K76 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC30.21■■■□□ 2.43
USP47Q96K76 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
USP47Q96K76 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
USP47Q96K76 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC30.21■■■□□ 2.43
USP47Q96K76 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC30.21■■■□□ 2.43
USP47Q96K76 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC30.21■■■□□ 2.43
USP47Q96K76 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC30.2■■■□□ 2.43
USP47Q96K76 SLC35A2-205ENST00000376529 865 ntTSL 3 BASIC30.2■■■□□ 2.43
USP47Q96K76 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC30.2■■■□□ 2.43
USP47Q96K76 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
USP47Q96K76 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC30.2■■■□□ 2.43
USP47Q96K76 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC30.2■■■□□ 2.43
USP47Q96K76 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
USP47Q96K76 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC30.2■■■□□ 2.43
USP47Q96K76 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
USP47Q96K76 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
USP47Q96K76 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC30.2■■■□□ 2.42
USP47Q96K76 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC30.2■■■□□ 2.42
USP47Q96K76 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC30.19■■■□□ 2.42
USP47Q96K76 HTATSF1-201ENST00000218364 2775 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
USP47Q96K76 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
USP47Q96K76 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC30.19■■■□□ 2.42
USP47Q96K76 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
USP47Q96K76 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC30.19■■■□□ 2.42
USP47Q96K76 AC034268.1-201ENST00000441047 882 ntBASIC30.19■■■□□ 2.42
USP47Q96K76 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
USP47Q96K76 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
USP47Q96K76 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC30.19■■■□□ 2.42
USP47Q96K76 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC30.19■■■□□ 2.42
USP47Q96K76 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
USP47Q96K76 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
USP47Q96K76 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
USP47Q96K76 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC30.18■■■□□ 2.42
USP47Q96K76 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC30.18■■■□□ 2.42
USP47Q96K76 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC30.18■■■□□ 2.42
USP47Q96K76 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC30.18■■■□□ 2.42
USP47Q96K76 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC30.18■■■□□ 2.42
USP47Q96K76 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
USP47Q96K76 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
USP47Q96K76 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
USP47Q96K76 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
USP47Q96K76 EP400NL-214ENST00000641289 2402 ntBASIC30.17■■■□□ 2.42
USP47Q96K76 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
USP47Q96K76 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC30.17■■■□□ 2.42
USP47Q96K76 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
USP47Q96K76 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
USP47Q96K76 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC30.17■■■□□ 2.42
USP47Q96K76 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC30.17■■■□□ 2.42
USP47Q96K76 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC30.17■■■□□ 2.42
USP47Q96K76 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
USP47Q96K76 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
USP47Q96K76 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC30.17■■■□□ 2.42
USP47Q96K76 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
USP47Q96K76 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC30.16■■■□□ 2.42
USP47Q96K76 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC30.16■■■□□ 2.42
USP47Q96K76 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC30.16■■■□□ 2.42
USP47Q96K76 AL162430.1-201ENST00000480705 870 ntBASIC30.16■■■□□ 2.42
USP47Q96K76 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC30.16■■■□□ 2.42
USP47Q96K76 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC30.16■■■□□ 2.42
USP47Q96K76 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC30.16■■■□□ 2.42
USP47Q96K76 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
USP47Q96K76 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
USP47Q96K76 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
USP47Q96K76 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC30.16■■■□□ 2.42
USP47Q96K76 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
USP47Q96K76 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
USP47Q96K76 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
USP47Q96K76 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC30.15■■■□□ 2.42
USP47Q96K76 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC30.15■■■□□ 2.42
USP47Q96K76 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC30.15■■■□□ 2.42
USP47Q96K76 KRT18P5-201ENST00000436075 1291 ntBASIC30.15■■■□□ 2.42
USP47Q96K76 AC092468.1-201ENST00000491321 562 ntTSL 4 BASIC30.15■■■□□ 2.42
USP47Q96K76 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC30.15■■■□□ 2.42
USP47Q96K76 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms