Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SKA1Q96BD8 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SKA1Q96BD8 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
SKA1Q96BD8 AL031602.1-201ENST00000633169 911 ntBASIC21.97■■□□□ 1.11
SKA1Q96BD8 BID-212ENST00000614949 1988 ntTSL 5 BASIC21.97■■□□□ 1.11
SKA1Q96BD8 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SKA1Q96BD8 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC21.97■■□□□ 1.11
SKA1Q96BD8 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
SKA1Q96BD8 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
SKA1Q96BD8 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.97■■□□□ 1.11
SKA1Q96BD8 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
SKA1Q96BD8 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.96■■□□□ 1.11
SKA1Q96BD8 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SKA1Q96BD8 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SKA1Q96BD8 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SKA1Q96BD8 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.96■■□□□ 1.11
SKA1Q96BD8 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SKA1Q96BD8 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SKA1Q96BD8 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC21.96■■□□□ 1.11
SKA1Q96BD8 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SKA1Q96BD8 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC21.96■■□□□ 1.11
SKA1Q96BD8 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC21.96■■□□□ 1.11
SKA1Q96BD8 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
SKA1Q96BD8 AC092053.2-201ENST00000640557 1818 ntBASIC21.96■■□□□ 1.11
SKA1Q96BD8 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SKA1Q96BD8 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
SKA1Q96BD8 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC21.96■■□□□ 1.11
SKA1Q96BD8 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
SKA1Q96BD8 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC21.96■■□□□ 1.11
SKA1Q96BD8 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC21.96■■□□□ 1.11
SKA1Q96BD8 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.95■■□□□ 1.11
SKA1Q96BD8 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.11
SKA1Q96BD8 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.11
SKA1Q96BD8 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.95■■□□□ 1.1
SKA1Q96BD8 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SKA1Q96BD8 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
SKA1Q96BD8 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SKA1Q96BD8 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.95■■□□□ 1.1
SKA1Q96BD8 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
SKA1Q96BD8 AC090192.1-201ENST00000517740 490 ntBASIC21.95■■□□□ 1.1
SKA1Q96BD8 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SKA1Q96BD8 CCDC92B-201ENST00000575506 885 ntBASIC21.95■■□□□ 1.1
SKA1Q96BD8 AC010525.1-201ENST00000585559 441 ntBASIC21.95■■□□□ 1.1
SKA1Q96BD8 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
SKA1Q96BD8 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.95■■□□□ 1.1
SKA1Q96BD8 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.95■■□□□ 1.1
SKA1Q96BD8 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
SKA1Q96BD8 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SKA1Q96BD8 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
SKA1Q96BD8 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
SKA1Q96BD8 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC21.95■■□□□ 1.1
SKA1Q96BD8 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
SKA1Q96BD8 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SKA1Q96BD8 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.94■■□□□ 1.1
SKA1Q96BD8 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC21.94■■□□□ 1.1
SKA1Q96BD8 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
SKA1Q96BD8 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC21.94■■□□□ 1.1
SKA1Q96BD8 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.94■■□□□ 1.1
SKA1Q96BD8 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SKA1Q96BD8 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SKA1Q96BD8 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC21.94■■□□□ 1.1
SKA1Q96BD8 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
SKA1Q96BD8 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC21.94■■□□□ 1.1
SKA1Q96BD8 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC21.94■■□□□ 1.1
SKA1Q96BD8 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SKA1Q96BD8 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
SKA1Q96BD8 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
SKA1Q96BD8 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC21.94■■□□□ 1.1
SKA1Q96BD8 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
SKA1Q96BD8 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SKA1Q96BD8 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
SKA1Q96BD8 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC21.93■■□□□ 1.1
SKA1Q96BD8 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.93■■□□□ 1.1
SKA1Q96BD8 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
SKA1Q96BD8 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
SKA1Q96BD8 KRT18P14-201ENST00000534205 1250 ntBASIC21.93■■□□□ 1.1
SKA1Q96BD8 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.93■■□□□ 1.1
SKA1Q96BD8 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.93■■□□□ 1.1
SKA1Q96BD8 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC21.93■■□□□ 1.1
SKA1Q96BD8 IKBKGP1-201ENST00000612193 1073 ntBASIC21.93■■□□□ 1.1
SKA1Q96BD8 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.93■■□□□ 1.1
SKA1Q96BD8 AC105233.4-201ENST00000642045 216 ntBASIC21.93■■□□□ 1.1
SKA1Q96BD8 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21.92■■□□□ 1.1
SKA1Q96BD8 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
SKA1Q96BD8 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SKA1Q96BD8 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
SKA1Q96BD8 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.92■■□□□ 1.1
SKA1Q96BD8 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
SKA1Q96BD8 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
SKA1Q96BD8 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.92■■□□□ 1.1
SKA1Q96BD8 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
SKA1Q96BD8 NTF6G-201ENST00000591094 616 ntBASIC21.92■■□□□ 1.1
SKA1Q96BD8 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SKA1Q96BD8 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
SKA1Q96BD8 FBXW4P1-201ENST00000426721 2239 ntBASIC21.92■■□□□ 1.1
SKA1Q96BD8 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.92■■□□□ 1.1
SKA1Q96BD8 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
SKA1Q96BD8 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
SKA1Q96BD8 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
SKA1Q96BD8 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms