Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC22.23■■□□□ 1.15
TTC28Q96AY4 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC22.23■■□□□ 1.15
TTC28Q96AY4 PXK-203ENST00000383715 1756 ntTSL 5 BASIC22.23■■□□□ 1.15
TTC28Q96AY4 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC22.23■■□□□ 1.15
TTC28Q96AY4 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC22.23■■□□□ 1.15
TTC28Q96AY4 AC144652.1-201ENST00000609974 1624 ntBASIC22.23■■□□□ 1.15
TTC28Q96AY4 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC22.23■■□□□ 1.15
TTC28Q96AY4 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC22.23■■□□□ 1.15
TTC28Q96AY4 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TTC28Q96AY4 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC22.23■■□□□ 1.15
TTC28Q96AY4 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC22.23■■□□□ 1.15
TTC28Q96AY4 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
TTC28Q96AY4 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
TTC28Q96AY4 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC22.22■■□□□ 1.15
TTC28Q96AY4 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
TTC28Q96AY4 AL162258.1-201ENST00000497086 753 ntTSL 2 BASIC22.22■■□□□ 1.15
TTC28Q96AY4 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC22.22■■□□□ 1.15
TTC28Q96AY4 DHDH-203ENST00000522614 776 ntTSL 5 BASIC22.22■■□□□ 1.15
TTC28Q96AY4 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC22.22■■□□□ 1.15
TTC28Q96AY4 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC22.22■■□□□ 1.15
TTC28Q96AY4 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC22.22■■□□□ 1.15
TTC28Q96AY4 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TTC28Q96AY4 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC22.22■■□□□ 1.15
TTC28Q96AY4 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC22.22■■□□□ 1.15
TTC28Q96AY4 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC22.22■■□□□ 1.15
TTC28Q96AY4 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC22.22■■□□□ 1.15
TTC28Q96AY4 AL355075.4-201ENST00000554988 638 ntBASIC22.22■■□□□ 1.15
TTC28Q96AY4 AC069544.1-201ENST00000609399 999 ntBASIC22.22■■□□□ 1.15
TTC28Q96AY4 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
TTC28Q96AY4 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC22.21■■□□□ 1.15
TTC28Q96AY4 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
TTC28Q96AY4 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC22.21■■□□□ 1.15
TTC28Q96AY4 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC22.21■■□□□ 1.15
TTC28Q96AY4 TMEM114-203ENST00000620492 945 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
TTC28Q96AY4 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
TTC28Q96AY4 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC22.21■■□□□ 1.15
TTC28Q96AY4 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC22.21■■□□□ 1.15
TTC28Q96AY4 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
TTC28Q96AY4 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
TTC28Q96AY4 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC22.21■■□□□ 1.15
TTC28Q96AY4 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
TTC28Q96AY4 AL135905.2-201ENST00000584934 1404 ntBASIC22.21■■□□□ 1.15
TTC28Q96AY4 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC22.21■■□□□ 1.15
TTC28Q96AY4 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC22.2■■□□□ 1.14
TTC28Q96AY4 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC22.2■■□□□ 1.14
TTC28Q96AY4 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC22.2■■□□□ 1.14
TTC28Q96AY4 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
TTC28Q96AY4 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.14
TTC28Q96AY4 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC22.2■■□□□ 1.14
TTC28Q96AY4 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC22.2■■□□□ 1.14
TTC28Q96AY4 AC010980.2-201ENST00000587099 1412 ntBASIC22.2■■□□□ 1.14
TTC28Q96AY4 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC22.2■■□□□ 1.14
TTC28Q96AY4 AC138907.5-202ENST00000569484 235 ntBASIC22.2■■□□□ 1.14
TTC28Q96AY4 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC22.2■■□□□ 1.14
TTC28Q96AY4 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
TTC28Q96AY4 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
TTC28Q96AY4 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC22.19■■□□□ 1.14
TTC28Q96AY4 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC22.19■■□□□ 1.14
TTC28Q96AY4 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC22.19■■□□□ 1.14
TTC28Q96AY4 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC22.19■■□□□ 1.14
TTC28Q96AY4 AL121894.2-201ENST00000602977 491 ntBASIC22.19■■□□□ 1.14
TTC28Q96AY4 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC22.19■■□□□ 1.14
TTC28Q96AY4 LSR-205ENST00000427250 1606 ntTSL 2 BASIC22.19■■□□□ 1.14
TTC28Q96AY4 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC22.19■■□□□ 1.14
TTC28Q96AY4 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
TTC28Q96AY4 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
TTC28Q96AY4 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC22.19■■□□□ 1.14
TTC28Q96AY4 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC22.19■■□□□ 1.14
TTC28Q96AY4 RMI2-205ENST00000576027 818 ntTSL 2 BASIC22.19■■□□□ 1.14
TTC28Q96AY4 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC22.19■■□□□ 1.14
TTC28Q96AY4 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC22.18■■□□□ 1.14
TTC28Q96AY4 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC22.18■■□□□ 1.14
TTC28Q96AY4 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
TTC28Q96AY4 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
TTC28Q96AY4 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC22.18■■□□□ 1.14
TTC28Q96AY4 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC22.18■■□□□ 1.14
TTC28Q96AY4 RPS2P55-201ENST00000397318 883 ntBASIC22.18■■□□□ 1.14
TTC28Q96AY4 AC107956.1-201ENST00000494359 873 ntBASIC22.18■■□□□ 1.14
TTC28Q96AY4 AP001412.1-201ENST00000608405 714 ntBASIC22.18■■□□□ 1.14
TTC28Q96AY4 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC22.17■■□□□ 1.14
TTC28Q96AY4 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC22.17■■□□□ 1.14
TTC28Q96AY4 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC22.17■■□□□ 1.14
TTC28Q96AY4 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
TTC28Q96AY4 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
TTC28Q96AY4 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC22.17■■□□□ 1.14
TTC28Q96AY4 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC22.17■■□□□ 1.14
TTC28Q96AY4 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC22.17■■□□□ 1.14
TTC28Q96AY4 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TTC28Q96AY4 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC22.16■■□□□ 1.14
TTC28Q96AY4 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TTC28Q96AY4 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC22.16■■□□□ 1.14
TTC28Q96AY4 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
TTC28Q96AY4 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TTC28Q96AY4 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC22.16■■□□□ 1.14
TTC28Q96AY4 AC007743.1-203ENST00000447423 1623 ntTSL 2 BASIC22.16■■□□□ 1.14
TTC28Q96AY4 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TTC28Q96AY4 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC22.16■■□□□ 1.14
TTC28Q96AY4 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC22.16■■□□□ 1.14
TTC28Q96AY4 KRT126P-201ENST00000549467 1181 ntBASIC22.16■■□□□ 1.14
TTC28Q96AY4 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC22.16■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms