Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.87■□□□□ 0.77
DEPDC4Q8N2C3 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.87■□□□□ 0.77
DEPDC4Q8N2C3 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.87■□□□□ 0.77
DEPDC4Q8N2C3 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
DEPDC4Q8N2C3 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
DEPDC4Q8N2C3 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
DEPDC4Q8N2C3 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
DEPDC4Q8N2C3 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
DEPDC4Q8N2C3 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC19.86■□□□□ 0.77
DEPDC4Q8N2C3 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
DEPDC4Q8N2C3 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
DEPDC4Q8N2C3 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC19.86■□□□□ 0.77
DEPDC4Q8N2C3 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
DEPDC4Q8N2C3 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC19.86■□□□□ 0.77
DEPDC4Q8N2C3 AC009086.3-201ENST00000623486 1008 ntBASIC19.86■□□□□ 0.77
DEPDC4Q8N2C3 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
DEPDC4Q8N2C3 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
DEPDC4Q8N2C3 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
DEPDC4Q8N2C3 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC19.86■□□□□ 0.77
DEPDC4Q8N2C3 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
DEPDC4Q8N2C3 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
DEPDC4Q8N2C3 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
DEPDC4Q8N2C3 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC19.85■□□□□ 0.77
DEPDC4Q8N2C3 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
DEPDC4Q8N2C3 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
DEPDC4Q8N2C3 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC19.85■□□□□ 0.77
DEPDC4Q8N2C3 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC19.85■□□□□ 0.77
DEPDC4Q8N2C3 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
DEPDC4Q8N2C3 ERRFI1-204ENST00000474874 479 ntTSL 3 BASIC19.85■□□□□ 0.77
DEPDC4Q8N2C3 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
DEPDC4Q8N2C3 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
DEPDC4Q8N2C3 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
DEPDC4Q8N2C3 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC19.85■□□□□ 0.77
DEPDC4Q8N2C3 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC19.84■□□□□ 0.77
DEPDC4Q8N2C3 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
DEPDC4Q8N2C3 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
DEPDC4Q8N2C3 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC19.84■□□□□ 0.77
DEPDC4Q8N2C3 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
DEPDC4Q8N2C3 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
DEPDC4Q8N2C3 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
DEPDC4Q8N2C3 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
DEPDC4Q8N2C3 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC19.84■□□□□ 0.77
DEPDC4Q8N2C3 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.84■□□□□ 0.77
DEPDC4Q8N2C3 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC19.84■□□□□ 0.77
DEPDC4Q8N2C3 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
DEPDC4Q8N2C3 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
DEPDC4Q8N2C3 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.83■□□□□ 0.77
DEPDC4Q8N2C3 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
DEPDC4Q8N2C3 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC19.83■□□□□ 0.77
DEPDC4Q8N2C3 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
DEPDC4Q8N2C3 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
DEPDC4Q8N2C3 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
DEPDC4Q8N2C3 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
DEPDC4Q8N2C3 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC19.83■□□□□ 0.77
DEPDC4Q8N2C3 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
DEPDC4Q8N2C3 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC19.83■□□□□ 0.76
DEPDC4Q8N2C3 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
DEPDC4Q8N2C3 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC19.83■□□□□ 0.76
DEPDC4Q8N2C3 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
DEPDC4Q8N2C3 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
DEPDC4Q8N2C3 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
DEPDC4Q8N2C3 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.83■□□□□ 0.76
DEPDC4Q8N2C3 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
DEPDC4Q8N2C3 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.83■□□□□ 0.76
DEPDC4Q8N2C3 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC19.82■□□□□ 0.76
DEPDC4Q8N2C3 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
DEPDC4Q8N2C3 AC073130.3-201ENST00000624389 2278 ntBASIC19.82■□□□□ 0.76
DEPDC4Q8N2C3 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC19.82■□□□□ 0.76
DEPDC4Q8N2C3 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
DEPDC4Q8N2C3 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
DEPDC4Q8N2C3 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
DEPDC4Q8N2C3 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
DEPDC4Q8N2C3 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC19.82■□□□□ 0.76
DEPDC4Q8N2C3 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC19.82■□□□□ 0.76
DEPDC4Q8N2C3 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC19.82■□□□□ 0.76
DEPDC4Q8N2C3 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
DEPDC4Q8N2C3 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC19.82■□□□□ 0.76
DEPDC4Q8N2C3 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
DEPDC4Q8N2C3 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
DEPDC4Q8N2C3 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
DEPDC4Q8N2C3 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
DEPDC4Q8N2C3 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
DEPDC4Q8N2C3 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
DEPDC4Q8N2C3 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
DEPDC4Q8N2C3 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC19.81■□□□□ 0.76
DEPDC4Q8N2C3 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
DEPDC4Q8N2C3 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
DEPDC4Q8N2C3 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC19.81■□□□□ 0.76
DEPDC4Q8N2C3 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
DEPDC4Q8N2C3 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
DEPDC4Q8N2C3 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC19.81■□□□□ 0.76
DEPDC4Q8N2C3 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
DEPDC4Q8N2C3 NALT1-201ENST00000429224 738 ntTSL 5 BASIC19.81■□□□□ 0.76
DEPDC4Q8N2C3 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
DEPDC4Q8N2C3 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
DEPDC4Q8N2C3 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
DEPDC4Q8N2C3 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.81■□□□□ 0.76
DEPDC4Q8N2C3 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
DEPDC4Q8N2C3 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.81■□□□□ 0.76
DEPDC4Q8N2C3 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms