Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
BEST3Q8N1M1 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
BEST3Q8N1M1 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
BEST3Q8N1M1 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
BEST3Q8N1M1 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
BEST3Q8N1M1 AC009237.3-201ENST00000393279 1427 ntBASIC19.89■□□□□ 0.77
BEST3Q8N1M1 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC19.89■□□□□ 0.77
BEST3Q8N1M1 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
BEST3Q8N1M1 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
BEST3Q8N1M1 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.89■□□□□ 0.77
BEST3Q8N1M1 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.89■□□□□ 0.77
BEST3Q8N1M1 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
BEST3Q8N1M1 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.89■□□□□ 0.77
BEST3Q8N1M1 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
BEST3Q8N1M1 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
BEST3Q8N1M1 NFE2L3P1-201ENST00000588207 1959 ntBASIC19.88■□□□□ 0.77
BEST3Q8N1M1 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC19.88■□□□□ 0.77
BEST3Q8N1M1 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
BEST3Q8N1M1 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.88■□□□□ 0.77
BEST3Q8N1M1 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
BEST3Q8N1M1 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
BEST3Q8N1M1 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
BEST3Q8N1M1 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.88■□□□□ 0.77
BEST3Q8N1M1 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.88■□□□□ 0.77
BEST3Q8N1M1 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC19.88■□□□□ 0.77
BEST3Q8N1M1 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
BEST3Q8N1M1 TESC-206ENST00000541210 936 ntTSL 3 BASIC19.88■□□□□ 0.77
BEST3Q8N1M1 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
BEST3Q8N1M1 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
BEST3Q8N1M1 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
BEST3Q8N1M1 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.88■□□□□ 0.77
BEST3Q8N1M1 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
BEST3Q8N1M1 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
BEST3Q8N1M1 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
BEST3Q8N1M1 KRT19P1-201ENST00000405746 1186 ntBASIC19.87■□□□□ 0.77
BEST3Q8N1M1 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC19.87■□□□□ 0.77
BEST3Q8N1M1 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
BEST3Q8N1M1 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
BEST3Q8N1M1 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC19.87■□□□□ 0.77
BEST3Q8N1M1 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
BEST3Q8N1M1 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.87■□□□□ 0.77
BEST3Q8N1M1 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
BEST3Q8N1M1 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.87■□□□□ 0.77
BEST3Q8N1M1 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.87■□□□□ 0.77
BEST3Q8N1M1 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
BEST3Q8N1M1 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
BEST3Q8N1M1 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
BEST3Q8N1M1 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
BEST3Q8N1M1 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
BEST3Q8N1M1 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC19.86■□□□□ 0.77
BEST3Q8N1M1 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
BEST3Q8N1M1 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
BEST3Q8N1M1 AC006015.1-201ENST00000429970 570 ntBASIC19.86■□□□□ 0.77
BEST3Q8N1M1 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.86■□□□□ 0.77
BEST3Q8N1M1 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC19.86■□□□□ 0.77
BEST3Q8N1M1 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC19.86■□□□□ 0.77
BEST3Q8N1M1 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.86■□□□□ 0.77
BEST3Q8N1M1 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
BEST3Q8N1M1 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
BEST3Q8N1M1 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC19.86■□□□□ 0.77
BEST3Q8N1M1 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
BEST3Q8N1M1 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
BEST3Q8N1M1 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
BEST3Q8N1M1 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
BEST3Q8N1M1 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
BEST3Q8N1M1 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
BEST3Q8N1M1 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.85■□□□□ 0.77
BEST3Q8N1M1 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
BEST3Q8N1M1 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.85■□□□□ 0.77
BEST3Q8N1M1 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
BEST3Q8N1M1 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.85■□□□□ 0.77
BEST3Q8N1M1 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC19.85■□□□□ 0.77
BEST3Q8N1M1 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC19.85■□□□□ 0.77
BEST3Q8N1M1 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
BEST3Q8N1M1 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
BEST3Q8N1M1 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
BEST3Q8N1M1 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
BEST3Q8N1M1 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
BEST3Q8N1M1 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC19.84■□□□□ 0.77
BEST3Q8N1M1 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
BEST3Q8N1M1 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.84■□□□□ 0.77
BEST3Q8N1M1 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC19.84■□□□□ 0.77
BEST3Q8N1M1 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
BEST3Q8N1M1 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BEST3Q8N1M1 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
BEST3Q8N1M1 OR7E47P-201ENST00000546390 1422 ntBASIC19.84■□□□□ 0.77
BEST3Q8N1M1 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
BEST3Q8N1M1 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
BEST3Q8N1M1 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
BEST3Q8N1M1 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
BEST3Q8N1M1 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
BEST3Q8N1M1 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
BEST3Q8N1M1 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
BEST3Q8N1M1 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
BEST3Q8N1M1 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC19.83■□□□□ 0.77
BEST3Q8N1M1 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC19.83■□□□□ 0.77
BEST3Q8N1M1 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.83■□□□□ 0.77
BEST3Q8N1M1 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC19.83■□□□□ 0.77
BEST3Q8N1M1 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
BEST3Q8N1M1 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms