Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PDLIM3Q53GG5 IRS3P-201ENST00000223076 1006 ntBASIC17.69■□□□□ 0.42
PDLIM3Q53GG5 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC17.69■□□□□ 0.42
PDLIM3Q53GG5 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC17.69■□□□□ 0.42
PDLIM3Q53GG5 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC17.69■□□□□ 0.42
PDLIM3Q53GG5 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PDLIM3Q53GG5 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC17.69■□□□□ 0.42
PDLIM3Q53GG5 CA15P2-201ENST00000611168 834 ntBASIC17.69■□□□□ 0.42
PDLIM3Q53GG5 AC092437.1-201ENST00000624794 1048 ntBASIC17.69■□□□□ 0.42
PDLIM3Q53GG5 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
PDLIM3Q53GG5 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC17.69■□□□□ 0.42
PDLIM3Q53GG5 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC17.69■□□□□ 0.42
PDLIM3Q53GG5 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PDLIM3Q53GG5 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
PDLIM3Q53GG5 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
PDLIM3Q53GG5 AC007375.3-201ENST00000600936 2314 ntBASIC17.69■□□□□ 0.42
PDLIM3Q53GG5 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PDLIM3Q53GG5 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
PDLIM3Q53GG5 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
PDLIM3Q53GG5 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PDLIM3Q53GG5 USP48-205ENST00000421625 2818 ntTSL 2 BASIC17.68■□□□□ 0.42
PDLIM3Q53GG5 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PDLIM3Q53GG5 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PDLIM3Q53GG5 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
PDLIM3Q53GG5 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PDLIM3Q53GG5 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PDLIM3Q53GG5 RAMP2-201ENST00000253796 780 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
PDLIM3Q53GG5 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PDLIM3Q53GG5 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC17.68■□□□□ 0.42
PDLIM3Q53GG5 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
PDLIM3Q53GG5 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC17.68■□□□□ 0.42
PDLIM3Q53GG5 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PDLIM3Q53GG5 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
PDLIM3Q53GG5 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
PDLIM3Q53GG5 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
PDLIM3Q53GG5 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
PDLIM3Q53GG5 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
PDLIM3Q53GG5 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
PDLIM3Q53GG5 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
PDLIM3Q53GG5 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC17.68■□□□□ 0.42
PDLIM3Q53GG5 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC17.67■□□□□ 0.42
PDLIM3Q53GG5 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM3Q53GG5 RASA4CP-201ENST00000424092 1398 ntBASIC17.67■□□□□ 0.42
PDLIM3Q53GG5 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM3Q53GG5 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
PDLIM3Q53GG5 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
PDLIM3Q53GG5 AC004911.1-201ENST00000416316 871 ntBASIC17.67■□□□□ 0.42
PDLIM3Q53GG5 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC17.67■□□□□ 0.42
PDLIM3Q53GG5 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC17.67■□□□□ 0.42
PDLIM3Q53GG5 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
PDLIM3Q53GG5 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM3Q53GG5 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM3Q53GG5 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM3Q53GG5 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC17.67■□□□□ 0.42
PDLIM3Q53GG5 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
PDLIM3Q53GG5 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC17.67■□□□□ 0.42
PDLIM3Q53GG5 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC17.66■□□□□ 0.42
PDLIM3Q53GG5 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC17.66■□□□□ 0.42
PDLIM3Q53GG5 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM3Q53GG5 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM3Q53GG5 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC17.66■□□□□ 0.42
PDLIM3Q53GG5 JTB-203ENST00000368589 1216 ntTSL 2 BASIC17.66■□□□□ 0.42
PDLIM3Q53GG5 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM3Q53GG5 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC17.66■□□□□ 0.42
PDLIM3Q53GG5 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC17.66■□□□□ 0.42
PDLIM3Q53GG5 DLX3-202ENST00000512495 834 ntTSL 2 BASIC17.66■□□□□ 0.42
PDLIM3Q53GG5 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
PDLIM3Q53GG5 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC17.66■□□□□ 0.42
PDLIM3Q53GG5 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM3Q53GG5 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM3Q53GG5 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM3Q53GG5 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM3Q53GG5 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM3Q53GG5 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM3Q53GG5 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM3Q53GG5 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
PDLIM3Q53GG5 SLC18A3-201ENST00000374115 2420 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
PDLIM3Q53GG5 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC17.65■□□□□ 0.42
PDLIM3Q53GG5 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM3Q53GG5 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM3Q53GG5 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM3Q53GG5 SERPINB5-201ENST00000382771 2783 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM3Q53GG5 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC17.65■□□□□ 0.42
PDLIM3Q53GG5 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
PDLIM3Q53GG5 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM3Q53GG5 ABHD17AP1-201ENST00000358206 933 ntBASIC17.65■□□□□ 0.42
PDLIM3Q53GG5 HLA-L-209ENST00000420110 1011 ntBASIC17.65■□□□□ 0.42
PDLIM3Q53GG5 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC17.65■□□□□ 0.42
PDLIM3Q53GG5 MIR6722-201ENST00000617286 78 ntBASIC17.65■□□□□ 0.42
PDLIM3Q53GG5 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM3Q53GG5 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM3Q53GG5 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM3Q53GG5 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
PDLIM3Q53GG5 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
PDLIM3Q53GG5 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
PDLIM3Q53GG5 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.42
PDLIM3Q53GG5 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
PDLIM3Q53GG5 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
PDLIM3Q53GG5 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
PDLIM3Q53GG5 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms