Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC20.98■□□□□ 0.95
YBX1P67809 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.97■□□□□ 0.95
YBX1P67809 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
YBX1P67809 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
YBX1P67809 BID-212ENST00000614949 1988 ntTSL 5 BASIC20.97■□□□□ 0.95
YBX1P67809 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
YBX1P67809 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
YBX1P67809 AC010141.3-201ENST00000456659 717 ntBASIC20.97■□□□□ 0.95
YBX1P67809 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
YBX1P67809 RHOF-204ENST00000537265 699 ntTSL 2 BASIC20.97■□□□□ 0.95
YBX1P67809 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
YBX1P67809 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
YBX1P67809 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
YBX1P67809 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
YBX1P67809 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.97■□□□□ 0.95
YBX1P67809 FADS6-204ENST00000614223 2044 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
YBX1P67809 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
YBX1P67809 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.96■□□□□ 0.95
YBX1P67809 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
YBX1P67809 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
YBX1P67809 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.96■□□□□ 0.95
YBX1P67809 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
YBX1P67809 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
YBX1P67809 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.96■□□□□ 0.95
YBX1P67809 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
YBX1P67809 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.96■□□□□ 0.95
YBX1P67809 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.96■□□□□ 0.95
YBX1P67809 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
YBX1P67809 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.96■□□□□ 0.95
YBX1P67809 AC068587.7-201ENST00000641602 218 ntBASIC20.96■□□□□ 0.95
YBX1P67809 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
YBX1P67809 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
YBX1P67809 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.96■□□□□ 0.95
YBX1P67809 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
YBX1P67809 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
YBX1P67809 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
YBX1P67809 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
YBX1P67809 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
YBX1P67809 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
YBX1P67809 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.95■□□□□ 0.94
YBX1P67809 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
YBX1P67809 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
YBX1P67809 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.95■□□□□ 0.94
YBX1P67809 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
YBX1P67809 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.95■□□□□ 0.94
YBX1P67809 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC20.94■□□□□ 0.94
YBX1P67809 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
YBX1P67809 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.94■□□□□ 0.94
YBX1P67809 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
YBX1P67809 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
YBX1P67809 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC20.94■□□□□ 0.94
YBX1P67809 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.94■□□□□ 0.94
YBX1P67809 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
YBX1P67809 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.94■□□□□ 0.94
YBX1P67809 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC20.94■□□□□ 0.94
YBX1P67809 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC20.94■□□□□ 0.94
YBX1P67809 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.94■□□□□ 0.94
YBX1P67809 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
YBX1P67809 OXCT2P1-201ENST00000447263 1535 ntBASIC20.94■□□□□ 0.94
YBX1P67809 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
YBX1P67809 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
YBX1P67809 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
YBX1P67809 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.93■□□□□ 0.94
YBX1P67809 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC20.93■□□□□ 0.94
YBX1P67809 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
YBX1P67809 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
YBX1P67809 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
YBX1P67809 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC20.93■□□□□ 0.94
YBX1P67809 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC20.93■□□□□ 0.94
YBX1P67809 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC20.93■□□□□ 0.94
YBX1P67809 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
YBX1P67809 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
YBX1P67809 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
YBX1P67809 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
YBX1P67809 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
YBX1P67809 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
YBX1P67809 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
YBX1P67809 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
YBX1P67809 AC010542.4-201ENST00000563151 1910 ntBASIC20.92■□□□□ 0.94
YBX1P67809 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.92■□□□□ 0.94
YBX1P67809 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.92■□□□□ 0.94
YBX1P67809 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
YBX1P67809 MAP7D1-201ENST00000316156 3456 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
YBX1P67809 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
YBX1P67809 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
YBX1P67809 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC20.92■□□□□ 0.94
YBX1P67809 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
YBX1P67809 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
YBX1P67809 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.91■□□□□ 0.94
YBX1P67809 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
YBX1P67809 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
YBX1P67809 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
YBX1P67809 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
YBX1P67809 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
YBX1P67809 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
YBX1P67809 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
YBX1P67809 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.91■□□□□ 0.94
YBX1P67809 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.91■□□□□ 0.94
YBX1P67809 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
YBX1P67809 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.91■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms