Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC20.41■□□□□ 0.86
LIM2P55344 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.41■□□□□ 0.86
LIM2P55344 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC20.41■□□□□ 0.86
LIM2P55344 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
LIM2P55344 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC20.41■□□□□ 0.86
LIM2P55344 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
LIM2P55344 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
LIM2P55344 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.41■□□□□ 0.86
LIM2P55344 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
LIM2P55344 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.4■□□□□ 0.86
LIM2P55344 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIM2P55344 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIM2P55344 C11orf96-202ENST00000528572 1834 ntBASIC20.4■□□□□ 0.86
LIM2P55344 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
LIM2P55344 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC20.4■□□□□ 0.86
LIM2P55344 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.39■□□□□ 0.86
LIM2P55344 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
LIM2P55344 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
LIM2P55344 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
LIM2P55344 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.39■□□□□ 0.86
LIM2P55344 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
LIM2P55344 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
LIM2P55344 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
LIM2P55344 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC20.39■□□□□ 0.86
LIM2P55344 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
LIM2P55344 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
LIM2P55344 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
LIM2P55344 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC20.39■□□□□ 0.85
LIM2P55344 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC20.39■□□□□ 0.85
LIM2P55344 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC20.39■□□□□ 0.85
LIM2P55344 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC20.39■□□□□ 0.85
LIM2P55344 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC20.39■□□□□ 0.85
LIM2P55344 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC20.39■□□□□ 0.85
LIM2P55344 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.39■□□□□ 0.85
LIM2P55344 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
LIM2P55344 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIM2P55344 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIM2P55344 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIM2P55344 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC20.38■□□□□ 0.85
LIM2P55344 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
LIM2P55344 TSPY4-201ENST00000383008 1143 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
LIM2P55344 AC012414.1-201ENST00000556676 535 ntBASIC20.38■□□□□ 0.85
LIM2P55344 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC20.38■□□□□ 0.85
LIM2P55344 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC20.38■□□□□ 0.85
LIM2P55344 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC20.38■□□□□ 0.85
LIM2P55344 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIM2P55344 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
LIM2P55344 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.38■□□□□ 0.85
LIM2P55344 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
LIM2P55344 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LIM2P55344 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC20.37■□□□□ 0.85
LIM2P55344 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.37■□□□□ 0.85
LIM2P55344 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LIM2P55344 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
LIM2P55344 GUK1-205ENST00000366722 850 ntTSL 3 BASIC20.37■□□□□ 0.85
LIM2P55344 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LIM2P55344 MFF-208ENST00000409616 1247 ntTSL 5 BASIC20.37■□□□□ 0.85
LIM2P55344 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.37■□□□□ 0.85
LIM2P55344 AL354811.1-201ENST00000610286 706 ntBASIC20.37■□□□□ 0.85
LIM2P55344 AL358852.1-201ENST00000623174 1268 ntBASIC20.37■□□□□ 0.85
LIM2P55344 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
LIM2P55344 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.37■□□□□ 0.85
LIM2P55344 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC20.37■□□□□ 0.85
LIM2P55344 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.37■□□□□ 0.85
LIM2P55344 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC20.37■□□□□ 0.85
LIM2P55344 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
LIM2P55344 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.36■□□□□ 0.85
LIM2P55344 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LIM2P55344 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIM2P55344 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.36■□□□□ 0.85
LIM2P55344 AP004607.7-201ENST00000527152 1677 ntBASIC20.36■□□□□ 0.85
LIM2P55344 AC019069.1-201ENST00000610008 1333 ntBASIC20.36■□□□□ 0.85
LIM2P55344 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIM2P55344 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.36■□□□□ 0.85
LIM2P55344 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIM2P55344 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIM2P55344 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.36■□□□□ 0.85
LIM2P55344 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.36■□□□□ 0.85
LIM2P55344 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIM2P55344 EFS-203ENST00000429593 2610 ntTSL 2 BASIC20.36■□□□□ 0.85
LIM2P55344 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIM2P55344 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIM2P55344 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
LIM2P55344 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC20.36■□□□□ 0.85
LIM2P55344 DTNB-207ENST00000405222 2273 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
LIM2P55344 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.35■□□□□ 0.85
LIM2P55344 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIM2P55344 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIM2P55344 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.35■□□□□ 0.85
LIM2P55344 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.35■□□□□ 0.85
LIM2P55344 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC20.35■□□□□ 0.85
LIM2P55344 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
LIM2P55344 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.35■□□□□ 0.85
LIM2P55344 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
LIM2P55344 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
LIM2P55344 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIM2P55344 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC20.34■□□□□ 0.85
LIM2P55344 MPST-204ENST00000404393 1329 ntTSL 5 BASIC20.34■□□□□ 0.85
LIM2P55344 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
LIM2P55344 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 21 ms