Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC18.81■□□□□ 0.6
COL8A1P27658 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
COL8A1P27658 BET1L-204ENST00000410108 637 ntTSL 3 BASIC18.81■□□□□ 0.6
COL8A1P27658 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
COL8A1P27658 TERF1P5-201ENST00000477545 1207 ntBASIC18.81■□□□□ 0.6
COL8A1P27658 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
COL8A1P27658 REXO1L12P-201ENST00000622156 912 ntBASIC18.81■□□□□ 0.6
COL8A1P27658 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC18.81■□□□□ 0.6
COL8A1P27658 PON2-218ENST00000633531 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL8A1P27658 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL8A1P27658 PCYT2-202ENST00000538721 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL8A1P27658 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL8A1P27658 MFF-207ENST00000409565 1548 ntTSL 2 BASIC18.8■□□□□ 0.6
COL8A1P27658 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL8A1P27658 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.8■□□□□ 0.6
COL8A1P27658 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC18.8■□□□□ 0.6
COL8A1P27658 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL8A1P27658 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL8A1P27658 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL8A1P27658 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL8A1P27658 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL8A1P27658 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
COL8A1P27658 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC18.8■□□□□ 0.6
COL8A1P27658 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC18.8■□□□□ 0.6
COL8A1P27658 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC18.8■□□□□ 0.6
COL8A1P27658 INO80E-214ENST00000620599 515 ntTSL 2 BASIC18.8■□□□□ 0.6
COL8A1P27658 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC18.8■□□□□ 0.6
COL8A1P27658 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL8A1P27658 AC009237.3-201ENST00000393279 1427 ntBASIC18.8■□□□□ 0.6
COL8A1P27658 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
COL8A1P27658 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
COL8A1P27658 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL8A1P27658 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL8A1P27658 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL8A1P27658 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL8A1P27658 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL8A1P27658 ARHGEF35-201ENST00000378115 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL8A1P27658 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
COL8A1P27658 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL8A1P27658 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL8A1P27658 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL8A1P27658 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL8A1P27658 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL8A1P27658 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL8A1P27658 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC18.79■□□□□ 0.6
COL8A1P27658 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC18.79■□□□□ 0.6
COL8A1P27658 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC18.79■□□□□ 0.6
COL8A1P27658 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC18.79■□□□□ 0.6
COL8A1P27658 OR10C1-204ENST00000622521 1039 ntBASIC18.79■□□□□ 0.6
COL8A1P27658 AC008694.1-202ENST00000636953 945 ntBASIC18.79■□□□□ 0.6
COL8A1P27658 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC18.79■□□□□ 0.6
COL8A1P27658 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL8A1P27658 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC18.79■□□□□ 0.6
COL8A1P27658 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
COL8A1P27658 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
COL8A1P27658 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
COL8A1P27658 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL8A1P27658 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL8A1P27658 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL8A1P27658 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
COL8A1P27658 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL8A1P27658 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL8A1P27658 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC18.78■□□□□ 0.6
COL8A1P27658 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
COL8A1P27658 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC18.78■□□□□ 0.6
COL8A1P27658 UBE2SP1-201ENST00000450587 669 ntBASIC18.78■□□□□ 0.6
COL8A1P27658 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL8A1P27658 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC18.78■□□□□ 0.6
COL8A1P27658 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC18.78■□□□□ 0.6
COL8A1P27658 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC18.78■□□□□ 0.6
COL8A1P27658 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.78■□□□□ 0.6
COL8A1P27658 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL8A1P27658 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
COL8A1P27658 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
COL8A1P27658 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
COL8A1P27658 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
COL8A1P27658 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC18.77■□□□□ 0.6
COL8A1P27658 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL8A1P27658 AC026366.1-201ENST00000488803 879 ntBASIC18.77■□□□□ 0.6
COL8A1P27658 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC18.77■□□□□ 0.6
COL8A1P27658 PLLP-204ENST00000569059 665 ntTSL 3 BASIC18.77■□□□□ 0.6
COL8A1P27658 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.77■□□□□ 0.6
COL8A1P27658 MIR4497-201ENST00000583208 89 ntBASIC18.77■□□□□ 0.6
COL8A1P27658 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL8A1P27658 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL8A1P27658 AL359736.2-201ENST00000621992 437 ntBASIC18.77■□□□□ 0.6
COL8A1P27658 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
COL8A1P27658 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL8A1P27658 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
COL8A1P27658 EI24-213ENST00000618552 1747 ntTSL 5 BASIC18.77■□□□□ 0.59
COL8A1P27658 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC18.77■□□□□ 0.59
COL8A1P27658 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC18.77■□□□□ 0.59
COL8A1P27658 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC18.77■□□□□ 0.59
COL8A1P27658 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC18.76■□□□□ 0.59
COL8A1P27658 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL8A1P27658 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC18.76■□□□□ 0.59
COL8A1P27658 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC18.76■□□□□ 0.59
COL8A1P27658 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL8A1P27658 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL8A1P27658 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms