Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
BDNFP23560 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
BDNFP23560 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
BDNFP23560 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
BDNFP23560 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC22.7■■□□□ 1.22
BDNFP23560 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
BDNFP23560 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
BDNFP23560 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
BDNFP23560 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
BDNFP23560 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
BDNFP23560 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
BDNFP23560 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC22.69■■□□□ 1.22
BDNFP23560 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
BDNFP23560 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
BDNFP23560 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
BDNFP23560 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
BDNFP23560 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC22.69■■□□□ 1.22
BDNFP23560 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
BDNFP23560 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC22.69■■□□□ 1.22
BDNFP23560 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC22.69■■□□□ 1.22
BDNFP23560 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC22.69■■□□□ 1.22
BDNFP23560 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC22.69■■□□□ 1.22
BDNFP23560 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC22.69■■□□□ 1.22
BDNFP23560 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC22.69■■□□□ 1.22
BDNFP23560 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
BDNFP23560 AC127496.7-201ENST00000625110 1798 ntBASIC22.68■■□□□ 1.22
BDNFP23560 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC22.68■■□□□ 1.22
BDNFP23560 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC22.68■■□□□ 1.22
BDNFP23560 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC22.68■■□□□ 1.22
BDNFP23560 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
BDNFP23560 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC22.68■■□□□ 1.22
BDNFP23560 TESC-206ENST00000541210 936 ntTSL 3 BASIC22.68■■□□□ 1.22
BDNFP23560 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
BDNFP23560 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
BDNFP23560 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
BDNFP23560 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
BDNFP23560 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
BDNFP23560 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC22.67■■□□□ 1.22
BDNFP23560 AL137784.2-201ENST00000607332 1000 ntBASIC22.67■■□□□ 1.22
BDNFP23560 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC22.67■■□□□ 1.22
BDNFP23560 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC22.66■■□□□ 1.22
BDNFP23560 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
BDNFP23560 TERT-206ENST00000508104 2486 ntTSL 5 BASIC22.66■■□□□ 1.22
BDNFP23560 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC22.66■■□□□ 1.22
BDNFP23560 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC22.66■■□□□ 1.22
BDNFP23560 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC22.66■■□□□ 1.22
BDNFP23560 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC22.66■■□□□ 1.22
BDNFP23560 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC22.66■■□□□ 1.22
BDNFP23560 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
BDNFP23560 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
BDNFP23560 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC22.66■■□□□ 1.22
BDNFP23560 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
BDNFP23560 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
BDNFP23560 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC22.65■■□□□ 1.22
BDNFP23560 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
BDNFP23560 ME3-201ENST00000323418 1068 ntTSL 5 BASIC22.65■■□□□ 1.22
BDNFP23560 AC004911.1-201ENST00000416316 871 ntBASIC22.65■■□□□ 1.22
BDNFP23560 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC22.65■■□□□ 1.22
BDNFP23560 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
BDNFP23560 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
BDNFP23560 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC22.65■■□□□ 1.22
BDNFP23560 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC22.65■■□□□ 1.22
BDNFP23560 KRT87P-202ENST00000534226 1464 ntBASIC22.65■■□□□ 1.22
BDNFP23560 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC22.65■■□□□ 1.22
BDNFP23560 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC22.65■■□□□ 1.22
BDNFP23560 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC22.64■■□□□ 1.22
BDNFP23560 AP006587.3-201ENST00000525742 1516 ntBASIC22.64■■□□□ 1.21
BDNFP23560 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
BDNFP23560 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC22.64■■□□□ 1.21
BDNFP23560 KRT19P1-201ENST00000405746 1186 ntBASIC22.64■■□□□ 1.21
BDNFP23560 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC22.64■■□□□ 1.21
BDNFP23560 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC22.64■■□□□ 1.21
BDNFP23560 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC22.64■■□□□ 1.21
BDNFP23560 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
BDNFP23560 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC22.64■■□□□ 1.21
BDNFP23560 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC22.64■■□□□ 1.21
BDNFP23560 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
BDNFP23560 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.64■■□□□ 1.21
BDNFP23560 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC22.64■■□□□ 1.21
BDNFP23560 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC22.64■■□□□ 1.21
BDNFP23560 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC22.63■■□□□ 1.21
BDNFP23560 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC22.63■■□□□ 1.21
BDNFP23560 MFF-207ENST00000409565 1548 ntTSL 2 BASIC22.63■■□□□ 1.21
BDNFP23560 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC22.63■■□□□ 1.21
BDNFP23560 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
BDNFP23560 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
BDNFP23560 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC22.63■■□□□ 1.21
BDNFP23560 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC22.63■■□□□ 1.21
BDNFP23560 STX7-201ENST00000367937 1090 ntTSL 5 BASIC22.63■■□□□ 1.21
BDNFP23560 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC22.63■■□□□ 1.21
BDNFP23560 DBI-210ENST00000542275 757 ntTSL 5 BASIC22.63■■□□□ 1.21
BDNFP23560 AC137761.2-201ENST00000561729 223 ntBASIC22.63■■□□□ 1.21
BDNFP23560 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC22.63■■□□□ 1.21
BDNFP23560 AC145350.3-201ENST00000569033 163 ntBASIC22.63■■□□□ 1.21
BDNFP23560 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC22.63■■□□□ 1.21
BDNFP23560 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC22.63■■□□□ 1.21
BDNFP23560 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC22.63■■□□□ 1.21
BDNFP23560 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC22.63■■□□□ 1.21
BDNFP23560 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC22.63■■□□□ 1.21
BDNFP23560 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC22.62■■□□□ 1.21
Retrieved 100 of 98,524 protein–RNA pairs in 59.2 ms