Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SEMA3DO95025 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SEMA3DO95025 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SEMA3DO95025 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.55■□□□□ 0.88
SEMA3DO95025 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
SEMA3DO95025 IGHV3-19-201ENST00000521488 291 ntBASIC20.55■□□□□ 0.88
SEMA3DO95025 AICDA-202ENST00000537228 667 ntTSL 5 BASIC20.55■□□□□ 0.88
SEMA3DO95025 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.55■□□□□ 0.88
SEMA3DO95025 AC126544.1-201ENST00000580842 1059 ntBASIC20.55■□□□□ 0.88
SEMA3DO95025 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SEMA3DO95025 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
SEMA3DO95025 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
SEMA3DO95025 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SEMA3DO95025 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
SEMA3DO95025 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC20.55■□□□□ 0.88
SEMA3DO95025 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
SEMA3DO95025 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
SEMA3DO95025 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SEMA3DO95025 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
SEMA3DO95025 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.54■□□□□ 0.88
SEMA3DO95025 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SEMA3DO95025 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.54■□□□□ 0.88
SEMA3DO95025 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SEMA3DO95025 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SEMA3DO95025 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC20.54■□□□□ 0.88
SEMA3DO95025 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC20.54■□□□□ 0.88
SEMA3DO95025 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.54■□□□□ 0.88
SEMA3DO95025 AP001330.3-201ENST00000520123 633 ntBASIC20.54■□□□□ 0.88
SEMA3DO95025 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC20.54■□□□□ 0.88
SEMA3DO95025 GRAMD4P4-201ENST00000613563 1115 ntBASIC20.54■□□□□ 0.88
SEMA3DO95025 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SEMA3DO95025 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
SEMA3DO95025 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC20.54■□□□□ 0.88
SEMA3DO95025 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
SEMA3DO95025 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SEMA3DO95025 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC20.53■□□□□ 0.88
SEMA3DO95025 NALT1-201ENST00000429224 738 ntTSL 5 BASIC20.53■□□□□ 0.88
SEMA3DO95025 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.53■□□□□ 0.88
SEMA3DO95025 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.53■□□□□ 0.88
SEMA3DO95025 AL355001.2-201ENST00000620617 1191 ntBASIC20.53■□□□□ 0.88
SEMA3DO95025 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC20.53■□□□□ 0.88
SEMA3DO95025 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
SEMA3DO95025 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SEMA3DO95025 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SEMA3DO95025 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
SEMA3DO95025 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
SEMA3DO95025 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
SEMA3DO95025 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
SEMA3DO95025 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
SEMA3DO95025 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.52■□□□□ 0.88
SEMA3DO95025 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
SEMA3DO95025 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SEMA3DO95025 AC099791.1-201ENST00000416440 715 ntBASIC20.52■□□□□ 0.88
SEMA3DO95025 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.52■□□□□ 0.88
SEMA3DO95025 AC008764.7-201ENST00000593779 1081 ntBASIC20.52■□□□□ 0.88
SEMA3DO95025 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.52■□□□□ 0.88
SEMA3DO95025 PRPSAP2-201ENST00000268835 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
SEMA3DO95025 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
SEMA3DO95025 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
SEMA3DO95025 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.51■□□□□ 0.87
SEMA3DO95025 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SEMA3DO95025 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SEMA3DO95025 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SEMA3DO95025 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SEMA3DO95025 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
SEMA3DO95025 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC20.51■□□□□ 0.87
SEMA3DO95025 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
SEMA3DO95025 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.51■□□□□ 0.87
SEMA3DO95025 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.51■□□□□ 0.87
SEMA3DO95025 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.51■□□□□ 0.87
SEMA3DO95025 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
SEMA3DO95025 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.51■□□□□ 0.87
SEMA3DO95025 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.51■□□□□ 0.87
SEMA3DO95025 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.51■□□□□ 0.87
SEMA3DO95025 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SEMA3DO95025 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SEMA3DO95025 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
SEMA3DO95025 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
SEMA3DO95025 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SEMA3DO95025 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.5■□□□□ 0.87
SEMA3DO95025 MIR939-201ENST00000401314 82 ntBASIC20.5■□□□□ 0.87
SEMA3DO95025 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.5■□□□□ 0.87
SEMA3DO95025 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SEMA3DO95025 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC20.5■□□□□ 0.87
SEMA3DO95025 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SEMA3DO95025 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SEMA3DO95025 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC20.5■□□□□ 0.87
SEMA3DO95025 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
SEMA3DO95025 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
SEMA3DO95025 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
SEMA3DO95025 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
SEMA3DO95025 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SEMA3DO95025 AC010542.4-201ENST00000563151 1910 ntBASIC20.49■□□□□ 0.87
SEMA3DO95025 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SEMA3DO95025 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
SEMA3DO95025 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
SEMA3DO95025 AC091305.1-201ENST00000479476 895 ntBASIC20.49■□□□□ 0.87
SEMA3DO95025 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC20.49■□□□□ 0.87
SEMA3DO95025 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.49■□□□□ 0.87
SEMA3DO95025 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 41.4 ms