Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
LDB3O75112 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC20.23■□□□□ 0.83
LDB3O75112 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LDB3O75112 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LDB3O75112 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LDB3O75112 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LDB3O75112 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LDB3O75112 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
LDB3O75112 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.23■□□□□ 0.83
LDB3O75112 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
LDB3O75112 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
LDB3O75112 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.22■□□□□ 0.83
LDB3O75112 BX005040.4-201ENST00000637145 1518 ntBASIC20.22■□□□□ 0.83
LDB3O75112 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.22■□□□□ 0.83
LDB3O75112 NT5C3AP1-201ENST00000394500 1012 ntBASIC20.22■□□□□ 0.83
LDB3O75112 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LDB3O75112 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
LDB3O75112 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC20.22■□□□□ 0.83
LDB3O75112 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LDB3O75112 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LDB3O75112 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC20.22■□□□□ 0.83
LDB3O75112 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
LDB3O75112 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.22■□□□□ 0.83
LDB3O75112 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LDB3O75112 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
LDB3O75112 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
LDB3O75112 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
LDB3O75112 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
LDB3O75112 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LDB3O75112 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
LDB3O75112 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.21■□□□□ 0.83
LDB3O75112 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
LDB3O75112 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC20.21■□□□□ 0.83
LDB3O75112 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LDB3O75112 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LDB3O75112 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC20.21■□□□□ 0.83
LDB3O75112 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
LDB3O75112 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
LDB3O75112 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.21■□□□□ 0.83
LDB3O75112 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
LDB3O75112 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LDB3O75112 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
LDB3O75112 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.2■□□□□ 0.82
LDB3O75112 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LDB3O75112 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LDB3O75112 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LDB3O75112 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LDB3O75112 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.2■□□□□ 0.82
LDB3O75112 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LDB3O75112 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
LDB3O75112 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
LDB3O75112 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
LDB3O75112 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LDB3O75112 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
LDB3O75112 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.19■□□□□ 0.82
LDB3O75112 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDB3O75112 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDB3O75112 C11orf96-202ENST00000528572 1834 ntBASIC20.19■□□□□ 0.82
LDB3O75112 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDB3O75112 AK1-201ENST00000223836 736 ntTSL 3 BASIC20.19■□□□□ 0.82
LDB3O75112 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC20.19■□□□□ 0.82
LDB3O75112 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC20.19■□□□□ 0.82
LDB3O75112 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.19■□□□□ 0.82
LDB3O75112 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC20.19■□□□□ 0.82
LDB3O75112 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDB3O75112 FAM99A-202ENST00000538190 1989 ntBASIC20.19■□□□□ 0.82
LDB3O75112 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDB3O75112 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDB3O75112 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
LDB3O75112 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
LDB3O75112 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
LDB3O75112 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDB3O75112 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDB3O75112 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDB3O75112 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
LDB3O75112 AL034346.1-201ENST00000568244 1277 ntBASIC20.18■□□□□ 0.82
LDB3O75112 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC20.18■□□□□ 0.82
LDB3O75112 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDB3O75112 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC20.18■□□□□ 0.82
LDB3O75112 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
LDB3O75112 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
LDB3O75112 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDB3O75112 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
LDB3O75112 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDB3O75112 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
LDB3O75112 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LDB3O75112 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDB3O75112 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LDB3O75112 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
LDB3O75112 AC027612.3-201ENST00000413684 1047 ntBASIC20.17■□□□□ 0.82
LDB3O75112 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDB3O75112 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
LDB3O75112 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
LDB3O75112 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC20.17■□□□□ 0.82
LDB3O75112 SPN-202ENST00000395389 1935 ntAPPRIS P2 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDB3O75112 AC026471.6-201ENST00000622954 1905 ntBASIC20.17■□□□□ 0.82
LDB3O75112 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
LDB3O75112 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.17■□□□□ 0.82
LDB3O75112 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.16■□□□□ 0.82
LDB3O75112 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms