Protein–RNA interactions for Protein: O60224

SSX4, Protein SSX4, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX4O60224 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.34■□□□□ 0.69
SSX4O60224 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SSX4O60224 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SSX4O60224 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
SSX4O60224 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SSX4O60224 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
SSX4O60224 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SSX4O60224 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.34■□□□□ 0.69
SSX4O60224 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
SSX4O60224 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC19.33■□□□□ 0.69
SSX4O60224 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
SSX4O60224 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SSX4O60224 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SSX4O60224 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
SSX4O60224 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
SSX4O60224 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SSX4O60224 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SSX4O60224 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SSX4O60224 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC19.33■□□□□ 0.68
SSX4O60224 AL136967.2-201ENST00000623968 743 ntBASIC19.33■□□□□ 0.68
SSX4O60224 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.33■□□□□ 0.68
SSX4O60224 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.33■□□□□ 0.68
SSX4O60224 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SSX4O60224 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SSX4O60224 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
SSX4O60224 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.68
SSX4O60224 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SSX4O60224 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SSX4O60224 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SSX4O60224 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
SSX4O60224 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SSX4O60224 PKD1P6-201ENST00000343738 4769 ntBASIC19.32■□□□□ 0.68
SSX4O60224 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSX4O60224 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC19.32■□□□□ 0.68
SSX4O60224 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC19.32■□□□□ 0.68
SSX4O60224 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.32■□□□□ 0.68
SSX4O60224 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC19.32■□□□□ 0.68
SSX4O60224 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SSX4O60224 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSX4O60224 AL022069.1-201ENST00000568025 1636 ntBASIC19.32■□□□□ 0.68
SSX4O60224 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
SSX4O60224 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SSX4O60224 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSX4O60224 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SSX4O60224 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSX4O60224 AC099791.2-201ENST00000605725 427 ntBASIC19.31■□□□□ 0.68
SSX4O60224 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SSX4O60224 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SSX4O60224 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSX4O60224 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
SSX4O60224 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SSX4O60224 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC19.31■□□□□ 0.68
SSX4O60224 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSX4O60224 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX4O60224 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.3■□□□□ 0.68
SSX4O60224 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.3■□□□□ 0.68
SSX4O60224 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX4O60224 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SSX4O60224 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX4O60224 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.68
SSX4O60224 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.3■□□□□ 0.68
SSX4O60224 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX4O60224 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.3■□□□□ 0.68
SSX4O60224 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX4O60224 AC092666.2-201ENST00000613287 246 ntBASIC19.3■□□□□ 0.68
SSX4O60224 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.3■□□□□ 0.68
SSX4O60224 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX4O60224 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX4O60224 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.3■□□□□ 0.68
SSX4O60224 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC19.3■□□□□ 0.68
SSX4O60224 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX4O60224 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
SSX4O60224 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSX4O60224 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SSX4O60224 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SSX4O60224 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSX4O60224 AC010542.4-201ENST00000563151 1910 ntBASIC19.29■□□□□ 0.68
SSX4O60224 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSX4O60224 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSX4O60224 SPEF1-201ENST00000379756 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSX4O60224 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSX4O60224 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSX4O60224 MIR939-201ENST00000401314 82 ntBASIC19.29■□□□□ 0.68
SSX4O60224 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.29■□□□□ 0.68
SSX4O60224 AP001330.3-201ENST00000520123 633 ntBASIC19.29■□□□□ 0.68
SSX4O60224 MIR4767-201ENST00000582827 78 ntBASIC19.29■□□□□ 0.68
SSX4O60224 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSX4O60224 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC19.29■□□□□ 0.68
SSX4O60224 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSX4O60224 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSX4O60224 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SSX4O60224 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.28■□□□□ 0.68
SSX4O60224 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SSX4O60224 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SSX4O60224 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC19.28■□□□□ 0.68
SSX4O60224 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
SSX4O60224 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC19.28■□□□□ 0.68
SSX4O60224 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SSX4O60224 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SSX4O60224 SERBP1P1-201ENST00000396021 1160 ntBASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms