Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
MSH5O43196 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
MSH5O43196 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
MSH5O43196 AC073130.3-201ENST00000624389 2278 ntBASIC28.72■■■□□ 2.19
MSH5O43196 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC28.72■■■□□ 2.19
MSH5O43196 SHD-204ENST00000599689 1729 ntTSL 5 BASIC28.72■■■□□ 2.19
MSH5O43196 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
MSH5O43196 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
MSH5O43196 AC127496.7-201ENST00000625110 1798 ntBASIC28.71■■■□□ 2.19
MSH5O43196 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC28.71■■■□□ 2.19
MSH5O43196 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC28.71■■■□□ 2.19
MSH5O43196 PPP1R14BP3-201ENST00000509033 445 ntBASIC28.71■■■□□ 2.19
MSH5O43196 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC28.71■■■□□ 2.19
MSH5O43196 AC010525.1-201ENST00000585559 441 ntBASIC28.71■■■□□ 2.19
MSH5O43196 KLK13-207ENST00000596955 737 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
MSH5O43196 OR13I1P-201ENST00000609811 1264 ntBASIC28.71■■■□□ 2.19
MSH5O43196 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
MSH5O43196 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
MSH5O43196 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC28.71■■■□□ 2.19
MSH5O43196 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
MSH5O43196 GPSM1-206ENST00000616132 2270 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
MSH5O43196 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC28.7■■■□□ 2.19
MSH5O43196 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
MSH5O43196 MPST-204ENST00000404393 1329 ntTSL 5 BASIC28.7■■■□□ 2.19
MSH5O43196 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
MSH5O43196 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
MSH5O43196 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
MSH5O43196 AC133637.1-201ENST00000624115 1537 ntBASIC28.7■■■□□ 2.19
MSH5O43196 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC28.7■■■□□ 2.19
MSH5O43196 AC026185.1-201ENST00000445748 174 ntBASIC28.7■■■□□ 2.18
MSH5O43196 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC28.7■■■□□ 2.18
MSH5O43196 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC28.7■■■□□ 2.18
MSH5O43196 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC28.7■■■□□ 2.18
MSH5O43196 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
MSH5O43196 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC28.7■■■□□ 2.18
MSH5O43196 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC28.7■■■□□ 2.18
MSH5O43196 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
MSH5O43196 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC28.7■■■□□ 2.18
MSH5O43196 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC28.69■■■□□ 2.18
MSH5O43196 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
MSH5O43196 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
MSH5O43196 AP002856.3-201ENST00000441665 635 ntTSL 3 BASIC28.69■■■□□ 2.18
MSH5O43196 AC006970.2-201ENST00000450065 779 ntBASIC28.69■■■□□ 2.18
MSH5O43196 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC28.69■■■□□ 2.18
MSH5O43196 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC28.69■■■□□ 2.18
MSH5O43196 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC28.69■■■□□ 2.18
MSH5O43196 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC28.69■■■□□ 2.18
MSH5O43196 GUSBP5-202ENST00000510805 1989 ntBASIC28.69■■■□□ 2.18
MSH5O43196 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC28.69■■■□□ 2.18
MSH5O43196 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC28.69■■■□□ 2.18
MSH5O43196 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC28.68■■■□□ 2.18
MSH5O43196 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
MSH5O43196 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC28.68■■■□□ 2.18
MSH5O43196 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC28.68■■■□□ 2.18
MSH5O43196 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC28.68■■■□□ 2.18
MSH5O43196 MAP2K4P1-201ENST00000438453 1195 ntBASIC28.68■■■□□ 2.18
MSH5O43196 AP005435.1-201ENST00000529293 1178 ntBASIC28.68■■■□□ 2.18
MSH5O43196 AL109923.1-201ENST00000618799 583 ntBASIC28.68■■■□□ 2.18
MSH5O43196 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC28.68■■■□□ 2.18
MSH5O43196 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC28.68■■■□□ 2.18
MSH5O43196 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
MSH5O43196 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC28.68■■■□□ 2.18
MSH5O43196 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC28.68■■■□□ 2.18
MSH5O43196 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC28.68■■■□□ 2.18
MSH5O43196 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC28.67■■■□□ 2.18
MSH5O43196 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC28.67■■■□□ 2.18
MSH5O43196 SLC35F5-203ENST00000409342 2284 ntTSL 2 BASIC28.67■■■□□ 2.18
MSH5O43196 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
MSH5O43196 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC28.67■■■□□ 2.18
MSH5O43196 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC28.67■■■□□ 2.18
MSH5O43196 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
MSH5O43196 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
MSH5O43196 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC28.67■■■□□ 2.18
MSH5O43196 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
MSH5O43196 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC28.66■■■□□ 2.18
MSH5O43196 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC28.66■■■□□ 2.18
MSH5O43196 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC28.66■■■□□ 2.18
MSH5O43196 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
MSH5O43196 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
MSH5O43196 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC28.66■■■□□ 2.18
MSH5O43196 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC28.66■■■□□ 2.18
MSH5O43196 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC28.66■■■□□ 2.18
MSH5O43196 GALNS-213ENST00000569433 723 ntTSL 3 BASIC28.66■■■□□ 2.18
MSH5O43196 AC105233.4-201ENST00000642045 216 ntBASIC28.66■■■□□ 2.18
MSH5O43196 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
MSH5O43196 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC28.66■■■□□ 2.18
MSH5O43196 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC28.66■■■□□ 2.18
MSH5O43196 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC28.66■■■□□ 2.18
MSH5O43196 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
MSH5O43196 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC28.65■■■□□ 2.18
MSH5O43196 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC28.65■■■□□ 2.18
MSH5O43196 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
MSH5O43196 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC28.65■■■□□ 2.18
MSH5O43196 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
MSH5O43196 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC28.65■■■□□ 2.18
MSH5O43196 KRT18P61-201ENST00000585825 1298 ntBASIC28.65■■■□□ 2.18
MSH5O43196 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC28.65■■■□□ 2.18
MSH5O43196 RASD1-202ENST00000579152 1404 ntTSL 2 BASIC28.65■■■□□ 2.18
MSH5O43196 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
MSH5O43196 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
Retrieved 100 of 98,524 protein–RNA pairs in 17.3 ms